Model info
| Transcription factor | RXRA | ||||||||
| Model | RXRA_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 17 | ||||||||
| Quality | C | ||||||||
| Consensus | hWbddRRdSARAGKYhA | ||||||||
| wAUC | 0.750710603202159 | ||||||||
| Best AUC | 0.7872038178500771 | ||||||||
| Benchmark datasets | 2 | ||||||||
| Aligned words | 405 | ||||||||
| TF family | RXR-related receptors (NR2){2.1.3} | ||||||||
| TF subfamily | Retinoid X receptors (NR2B){2.1.3.1} | ||||||||
| HGNC | 10477 | ||||||||
| EntrezGene | 6256 | ||||||||
| UniProt ID | RXRA_HUMAN | ||||||||
| UniProt AC | P19793 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 187.16 | 104.558 | 41.296 | 71.987 |
| 02 | 229.953 | 21.695 | 31.914 | 121.438 |
| 03 | 65.589 | 108.314 | 164.784 | 66.313 |
| 04 | 71.888 | 51.577 | 81.355 | 200.18 |
| 05 | 171.924 | 16.22 | 168.404 | 48.452 |
| 06 | 71.696 | 7.086 | 303.011 | 23.207 |
| 07 | 85.686 | 23.477 | 266.525 | 29.313 |
| 08 | 88.09 | 31.153 | 137.793 | 147.963 |
| 09 | 40.669 | 234.08 | 102.558 | 27.692 |
| 10 | 379.62 | 12.677 | 4.973 | 7.731 |
| 11 | 278.802 | 15.846 | 93.618 | 16.734 |
| 12 | 344.99 | 1.895 | 56.289 | 1.826 |
| 13 | 67.529 | 2.941 | 325.756 | 8.774 |
| 14 | 38.271 | 14.306 | 300.52 | 51.903 |
| 15 | 12.21 | 69.62 | 55.258 | 267.912 |
| 16 | 62.89 | 225.098 | 55.725 | 61.287 |
| 17 | 329.242 | 24.932 | 22.883 | 27.943 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.608 | 0.032 | -0.876 | -0.335 |
| 02 | 0.812 | -1.488 | -1.123 | 0.179 |
| 03 | -0.426 | 0.066 | 0.481 | -0.416 |
| 04 | -0.337 | -0.661 | -0.215 | 0.674 |
| 05 | 0.523 | -1.758 | 0.503 | -0.721 |
| 06 | -0.339 | -2.482 | 1.086 | -1.425 |
| 07 | -0.164 | -1.414 | 0.959 | -1.204 |
| 08 | -0.137 | -1.146 | 0.304 | 0.375 |
| 09 | -0.891 | 0.83 | 0.013 | -1.258 |
| 10 | 1.311 | -1.981 | -2.765 | -2.41 |
| 11 | 1.004 | -1.779 | -0.077 | -1.729 |
| 12 | 1.216 | -3.41 | -0.575 | -3.43 |
| 13 | -0.398 | -3.141 | 1.158 | -2.303 |
| 14 | -0.949 | -1.872 | 1.078 | -0.654 |
| 15 | -2.014 | -0.368 | -0.593 | 0.964 |
| 16 | -0.467 | 0.791 | -0.585 | -0.493 |
| 17 | 1.169 | -1.358 | -1.438 | -1.25 |