Model info
| Transcription factor | RXRA | ||||||||
| Model | RXRA_HUMAN.H10DI.B | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 22 | ||||||||
| Quality | B | ||||||||
| Consensus | nnnnhWvbRRRdSARAGKYbRn | ||||||||
| wAUC | 0.765100527679988 | ||||||||
| Best AUC | 0.8008507741143962 | ||||||||
| Benchmark datasets | 2 | ||||||||
| Aligned words | 409 | ||||||||
| TF family | RXR-related receptors (NR2){2.1.3} | ||||||||
| TF subfamily | Retinoid X receptors (NR2B){2.1.3.1} | ||||||||
| HGNC | 10477 | ||||||||
| EntrezGene | 6256 | ||||||||
| UniProt ID | RXRA_HUMAN | ||||||||
| UniProt AC | P19793 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 39.52 | 16.281 | 44.575 | 23.444 | 30.277 | 16.458 | 6.184 | 28.302 | 38.104 | 6.971 | 19.179 | 18.374 | 14.663 | 12.994 | 49.742 | 39.931 |
| 02 | 40.763 | 15.204 | 53.78 | 12.817 | 21.252 | 15.393 | 1.136 | 14.925 | 13.956 | 39.874 | 47.707 | 18.143 | 12.797 | 33.408 | 36.797 | 27.049 |
| 03 | 38.908 | 20.066 | 16.237 | 13.557 | 30.522 | 43.348 | 1.017 | 28.993 | 56.09 | 34.265 | 27.106 | 21.959 | 16.202 | 15.712 | 16.871 | 24.148 |
| 04 | 72.668 | 27.456 | 22.845 | 18.752 | 55.465 | 34.046 | 0.954 | 22.926 | 28.942 | 23.387 | 4.951 | 3.952 | 32.523 | 23.315 | 11.03 | 21.789 |
| 05 | 111.565 | 10.152 | 18.854 | 49.026 | 52.448 | 7.32 | 0.0 | 48.436 | 27.867 | 1.98 | 6.946 | 2.986 | 20.6 | 3.828 | 12.833 | 30.157 |
| 06 | 48.215 | 46.584 | 87.124 | 30.556 | 6.344 | 7.751 | 0.0 | 9.185 | 7.729 | 6.918 | 16.076 | 7.911 | 14.658 | 45.437 | 54.46 | 16.051 |
| 07 | 12.161 | 20.964 | 19.712 | 24.109 | 15.976 | 13.557 | 2.972 | 74.185 | 24.627 | 19.953 | 34.147 | 78.935 | 6.982 | 13.152 | 21.932 | 21.637 |
| 08 | 26.774 | 0.0 | 22.953 | 10.019 | 46.968 | 0.929 | 5.962 | 13.768 | 38.167 | 0.976 | 24.913 | 14.706 | 75.84 | 2.892 | 107.197 | 12.937 |
| 09 | 25.58 | 8.694 | 148.667 | 4.808 | 1.934 | 0.958 | 1.904 | 0.0 | 20.878 | 5.42 | 126.859 | 7.867 | 3.177 | 2.959 | 41.353 | 3.94 |
| 10 | 16.819 | 1.966 | 32.785 | 0.0 | 9.058 | 3.04 | 0.95 | 4.983 | 75.455 | 14.885 | 213.756 | 14.687 | 3.974 | 0.952 | 7.91 | 3.779 |
| 11 | 25.253 | 4.002 | 47.325 | 28.726 | 5.167 | 2.016 | 0.0 | 13.66 | 33.511 | 25.916 | 84.974 | 111.0 | 3.176 | 3.903 | 10.801 | 5.57 |
| 12 | 5.954 | 42.391 | 14.83 | 3.933 | 4.862 | 25.977 | 0.0 | 4.997 | 16.808 | 83.212 | 30.896 | 12.185 | 13.118 | 80.504 | 58.451 | 6.884 |
| 13 | 36.84 | 1.046 | 2.856 | 0.0 | 219.399 | 2.859 | 2.954 | 6.871 | 91.621 | 4.902 | 3.832 | 3.822 | 27.022 | 0.0 | 0.0 | 0.977 |
| 14 | 261.229 | 11.852 | 89.996 | 11.805 | 5.869 | 0.0 | 1.982 | 0.955 | 5.819 | 0.89 | 2.012 | 0.921 | 3.8 | 0.969 | 3.839 | 3.062 |
| 15 | 230.21 | 1.894 | 41.861 | 2.751 | 13.711 | 0.0 | 0.0 | 0.0 | 86.87 | 1.045 | 9.915 | 0.0 | 8.051 | 0.911 | 6.826 | 0.955 |
| 16 | 36.23 | 1.987 | 290.679 | 9.945 | 0.0 | 0.923 | 0.971 | 1.955 | 14.272 | 0.0 | 42.358 | 1.974 | 0.0 | 0.0 | 3.706 | 0.0 |
| 17 | 4.97 | 0.949 | 43.676 | 0.907 | 0.0 | 1.052 | 0.0 | 1.858 | 30.359 | 4.861 | 251.211 | 51.283 | 0.0 | 0.0 | 12.883 | 0.991 |
| 18 | 8.863 | 2.801 | 8.209 | 15.455 | 0.994 | 1.947 | 0.0 | 3.922 | 14.95 | 55.299 | 40.459 | 197.061 | 1.018 | 8.794 | 8.764 | 36.463 |
| 19 | 3.017 | 6.101 | 15.727 | 0.981 | 10.611 | 46.165 | 3.073 | 8.992 | 8.792 | 39.667 | 2.979 | 5.995 | 25.398 | 140.841 | 40.049 | 46.613 |
| 20 | 36.208 | 2.947 | 1.895 | 6.768 | 206.861 | 9.855 | 8.545 | 7.512 | 38.968 | 3.913 | 9.769 | 9.177 | 42.558 | 7.785 | 9.139 | 3.1 |
| 21 | 67.086 | 79.33 | 101.903 | 76.275 | 3.971 | 11.006 | 0.949 | 8.575 | 9.188 | 3.079 | 10.725 | 6.356 | 11.837 | 2.057 | 3.086 | 9.577 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 0.44 | -0.433 | 0.56 | -0.076 | 0.177 | -0.423 | -1.365 | 0.11 | 0.404 | -1.252 | -0.273 | -0.315 | -0.535 | -0.653 | 0.668 | 0.45 |
| 02 | 0.471 | -0.5 | 0.746 | -0.666 | -0.172 | -0.488 | -2.833 | -0.518 | -0.584 | 0.449 | 0.627 | -0.327 | -0.668 | 0.274 | 0.37 | 0.065 |
| 03 | 0.425 | -0.228 | -0.436 | -0.612 | 0.185 | 0.532 | -2.915 | 0.134 | 0.788 | 0.299 | 0.067 | -0.14 | -0.438 | -0.468 | -0.398 | -0.046 |
| 04 | 1.045 | 0.08 | -0.101 | -0.295 | 0.776 | 0.293 | -2.961 | -0.098 | 0.132 | -0.078 | -1.573 | -1.781 | 0.247 | -0.081 | -0.812 | -0.148 |
| 05 | 1.472 | -0.892 | -0.29 | 0.654 | 0.721 | -1.205 | -4.226 | 0.642 | 0.095 | -2.389 | -1.255 | -2.034 | -0.203 | -1.81 | -0.665 | 0.173 |
| 06 | 0.637 | 0.603 | 1.226 | 0.186 | -1.341 | -1.151 | -4.226 | -0.988 | -1.154 | -1.259 | -0.446 | -1.131 | -0.536 | 0.579 | 0.758 | -0.447 |
| 07 | -0.717 | -0.185 | -0.246 | -0.048 | -0.452 | -0.612 | -2.038 | 1.066 | -0.027 | -0.234 | 0.296 | 1.127 | -1.25 | -0.641 | -0.141 | -0.154 |
| 08 | 0.055 | -4.226 | -0.096 | -0.905 | 0.611 | -2.981 | -1.4 | -0.597 | 0.406 | -2.945 | -0.016 | -0.533 | 1.088 | -2.062 | 1.432 | -0.657 |
| 09 | 0.01 | -1.041 | 1.758 | -1.601 | -2.409 | -2.959 | -2.422 | -4.226 | -0.189 | -1.489 | 1.6 | -1.137 | -1.978 | -2.042 | 0.485 | -1.784 |
| 10 | -0.401 | -2.395 | 0.255 | -4.226 | -1.002 | -2.018 | -2.964 | -1.567 | 1.082 | -0.521 | 2.121 | -0.534 | -1.776 | -2.963 | -1.132 | -1.822 |
| 11 | -0.002 | -1.77 | 0.619 | 0.125 | -1.534 | -2.374 | -4.226 | -0.604 | 0.277 | 0.023 | 1.201 | 1.467 | -1.979 | -1.793 | -0.832 | -1.463 |
| 12 | -1.401 | 0.51 | -0.524 | -1.786 | -1.59 | 0.026 | -4.226 | -1.565 | -0.402 | 1.18 | 0.197 | -0.715 | -0.644 | 1.147 | 0.829 | -1.264 |
| 13 | 0.371 | -2.895 | -2.073 | -4.226 | 2.147 | -2.072 | -2.043 | -1.265 | 1.276 | -1.583 | -1.809 | -1.812 | 0.064 | -4.226 | -4.226 | -2.944 |
| 14 | 2.321 | -0.742 | 1.258 | -0.746 | -1.414 | -4.226 | -2.388 | -2.961 | -1.422 | -3.011 | -2.376 | -2.986 | -1.817 | -2.95 | -1.807 | -2.011 |
| 15 | 2.195 | -2.427 | 0.497 | -2.106 | -0.601 | -4.226 | -4.226 | -4.226 | 1.223 | -2.895 | -0.915 | -4.226 | -1.115 | -2.994 | -1.272 | -2.961 |
| 16 | 0.354 | -2.386 | 2.427 | -0.912 | -4.226 | -2.985 | -2.949 | -2.4 | -0.562 | -4.226 | 0.509 | -2.392 | -4.226 | -4.226 | -1.84 | -4.226 |
| 17 | -1.57 | -2.965 | 0.539 | -2.997 | -4.226 | -2.89 | -4.226 | -2.443 | 0.179 | -1.59 | 2.282 | 0.699 | -4.226 | -4.226 | -0.661 | -2.934 |
| 18 | -1.023 | -2.09 | -1.096 | -0.484 | -2.932 | -2.403 | -4.226 | -1.788 | -0.516 | 0.774 | 0.464 | 2.039 | -2.914 | -1.03 | -1.033 | 0.361 |
| 19 | -2.025 | -1.378 | -0.467 | -2.941 | -0.849 | 0.594 | -2.008 | -1.009 | -1.03 | 0.444 | -2.036 | -1.394 | 0.003 | 1.704 | 0.453 | 0.604 |
| 20 | 0.354 | -2.045 | -2.426 | -1.28 | 2.088 | -0.921 | -1.058 | -1.181 | 0.426 | -1.79 | -0.929 | -0.989 | 0.514 | -1.147 | -0.993 | -2.0 |
| 21 | 0.966 | 1.132 | 1.382 | 1.093 | -1.777 | -0.814 | -2.965 | -1.054 | -0.988 | -2.006 | -0.839 | -1.339 | -0.744 | -2.357 | -2.004 | -0.948 |