Model info
| Transcription factor | RUNX3 | ||||||||
| Model | RUNX3_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Consensus | nbbTGTGGTYW | ||||||||
| wAUC | 0.9054571417441384 | ||||||||
| Best AUC | 0.9054571417441385 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | Runt-related factors{6.4.1} | ||||||||
| TF subfamily | Runx3 (PEBP2alphaC, CBF-alpha3, AML-2){6.4.1.0.3} | ||||||||
| HGNC | 10473 | ||||||||
| EntrezGene | 864 | ||||||||
| UniProt ID | RUNX3_HUMAN | ||||||||
| UniProt AC | Q13761 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 85.397 | 104.887 | 151.632 | 158.083 |
| 02 | 67.136 | 96.313 | 108.708 | 227.843 |
| 03 | 36.41 | 191.828 | 50.565 | 221.197 |
| 04 | 18.755 | 7.191 | 5.03 | 469.024 |
| 05 | 1.063 | 2.908 | 492.168 | 3.86 |
| 06 | 15.358 | 49.746 | 0.0 | 434.897 |
| 07 | 0.0 | 0.0 | 499.044 | 0.956 |
| 08 | 0.0 | 0.0 | 492.976 | 7.024 |
| 09 | 0.0 | 26.916 | 7.704 | 465.381 |
| 10 | 19.921 | 87.456 | 43.945 | 348.678 |
| 11 | 166.846 | 2.009 | 60.967 | 270.178 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.375 | -0.173 | 0.191 | 0.232 |
| 02 | -0.611 | -0.257 | -0.138 | 0.595 |
| 03 | -1.204 | 0.424 | -0.887 | 0.565 |
| 04 | -1.83 | -2.672 | -2.956 | 1.313 |
| 05 | -3.879 | -3.345 | 1.361 | -3.152 |
| 06 | -2.013 | -0.903 | -4.4 | 1.238 |
| 07 | -4.4 | -4.4 | 1.375 | -3.921 |
| 08 | -4.4 | -4.4 | 1.363 | -2.692 |
| 09 | -4.4 | -1.492 | -2.615 | 1.306 |
| 10 | -1.774 | -0.352 | -1.023 | 1.018 |
| 11 | 0.286 | -3.57 | -0.705 | 0.764 |