Model info
| Transcription factor | Runx2 | ||||||||
| Model | RUNX2_MOUSE.H10MO.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Consensus | bTGTGGTKdbb | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 73 | ||||||||
| TF family | Runt-related factors{6.4.1} | ||||||||
| TF subfamily | Runx2 (PEBP2alphaA, CBF-alpha1){6.4.1.0.1} | ||||||||
| MGI | 99829 | ||||||||
| EntrezGene | 12393 | ||||||||
| UniProt ID | RUNX2_MOUSE | ||||||||
| UniProt AC | Q08775 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 10.861 | 26.202 | 12.501 | 23.626 |
| 02 | 7.378 | 3.396 | 1.991 | 60.425 |
| 03 | 0.0 | 4.684 | 67.569 | 0.937 |
| 04 | 4.918 | 9.368 | 0.937 | 57.966 |
| 05 | 0.0 | 0.0 | 73.19 | 0.0 |
| 06 | 0.0 | 0.0 | 72.136 | 1.054 |
| 07 | 1.171 | 6.324 | 8.08 | 57.615 |
| 08 | 4.801 | 9.251 | 11.827 | 47.31 |
| 09 | 21.43 | 8.197 | 18.854 | 24.709 |
| 10 | 12.062 | 15.106 | 31.384 | 14.638 |
| 11 | 5.797 | 9.427 | 23.831 | 34.136 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.484 | 0.342 | -0.356 | 0.243 |
| 02 | -0.83 | -1.467 | -1.844 | 1.155 |
| 03 | -2.893 | -1.213 | 1.265 | -2.266 |
| 04 | -1.173 | -0.618 | -2.266 | 1.114 |
| 05 | -2.893 | -2.893 | 1.344 | -2.893 |
| 06 | -2.893 | -2.893 | 1.33 | -2.209 |
| 07 | -2.155 | -0.963 | -0.75 | 1.108 |
| 08 | -1.193 | -0.629 | -0.406 | 0.915 |
| 09 | 0.15 | -0.737 | 0.028 | 0.286 |
| 10 | -0.388 | -0.18 | 0.516 | -0.209 |
| 11 | -1.037 | -0.612 | 0.251 | 0.598 |