Model info
| Transcription factor | Runx1 | ||||||||
| Model | RUNX1_MOUSE.H10MO.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 10 | ||||||||
| Quality | B | ||||||||
| Consensus | dbTGYGGThd | ||||||||
| wAUC | 0.7789709633569243 | ||||||||
| Best AUC | 0.7789709633569243 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 86 | ||||||||
| TF family | Runt-related factors{6.4.1} | ||||||||
| TF subfamily | Runx1 (PEBP2alphaB, CBF-alpha2, AML-1){6.4.1.0.2} | ||||||||
| MGI | 99852 | ||||||||
| EntrezGene | |||||||||
| UniProt ID | RUNX1_MOUSE | ||||||||
| UniProt AC | Q03347 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 24.091 | 9.805 | 12.232 | 39.872 |
| 02 | 12.046 | 30.721 | 12.419 | 30.814 |
| 03 | 6.723 | 0.84 | 0.0 | 78.436 |
| 04 | 3.362 | 3.268 | 77.689 | 1.681 |
| 05 | 1.121 | 18.769 | 3.455 | 62.656 |
| 06 | 0.56 | 0.0 | 85.44 | 0.0 |
| 07 | 0.84 | 0.0 | 85.16 | 0.0 |
| 08 | 2.521 | 1.401 | 7.377 | 74.701 |
| 09 | 15.594 | 18.582 | 7.844 | 43.98 |
| 10 | 39.358 | 10.038 | 12.466 | 24.138 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.108 | -0.728 | -0.527 | 0.595 |
| 02 | -0.541 | 0.342 | -0.513 | 0.345 |
| 03 | -1.06 | -2.449 | -3.011 | 1.258 |
| 04 | -1.62 | -1.641 | 1.248 | -2.091 |
| 05 | -2.315 | -0.129 | -1.599 | 1.037 |
| 06 | -2.603 | -3.011 | 1.342 | -3.011 |
| 07 | -2.449 | -3.011 | 1.339 | -3.011 |
| 08 | -1.828 | -2.197 | -0.98 | 1.21 |
| 09 | -0.303 | -0.138 | -0.926 | 0.69 |
| 10 | 0.582 | -0.707 | -0.51 | 0.11 |