Model info
| Transcription factor | RUNX1 | ||||||||
| Model | RUNX1_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Consensus | nYTGTGGTYWn | ||||||||
| wAUC | 0.9213427098293004 | ||||||||
| Best AUC | 0.9282625080082361 | ||||||||
| Benchmark datasets | 3 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | Runt-related factors{6.4.1} | ||||||||
| TF subfamily | Runx1 (PEBP2alphaB, CBF-alpha2, AML-1){6.4.1.0.2} | ||||||||
| HGNC | 10471 | ||||||||
| EntrezGene | 861 | ||||||||
| UniProt ID | RUNX1_HUMAN | ||||||||
| UniProt AC | Q01196 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 64.533 | 146.915 | 137.419 | 151.133 |
| 02 | 46.627 | 240.803 | 12.474 | 200.096 |
| 03 | 7.742 | 7.063 | 4.329 | 480.866 |
| 04 | 0.0 | 0.947 | 497.21 | 1.843 |
| 05 | 6.646 | 122.696 | 5.764 | 364.894 |
| 06 | 2.02 | 0.0 | 497.98 | 0.0 |
| 07 | 0.0 | 0.0 | 500.0 | 0.0 |
| 08 | 0.961 | 32.402 | 20.677 | 445.959 |
| 09 | 9.408 | 121.546 | 19.162 | 349.884 |
| 10 | 172.929 | 20.904 | 45.799 | 260.369 |
| 11 | 73.427 | 120.727 | 180.552 | 125.295 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.65 | 0.16 | 0.094 | 0.188 |
| 02 | -0.966 | 0.65 | -2.2 | 0.466 |
| 03 | -2.611 | -2.687 | -3.069 | 1.338 |
| 04 | -4.4 | -3.924 | 1.371 | -3.618 |
| 05 | -2.737 | -0.018 | -2.85 | 1.063 |
| 06 | -3.567 | -4.4 | 1.373 | -4.4 |
| 07 | -4.4 | -4.4 | 1.377 | -4.4 |
| 08 | -3.919 | -1.316 | -1.739 | 1.263 |
| 09 | -2.446 | -0.028 | -1.81 | 1.021 |
| 10 | 0.321 | -1.729 | -0.983 | 0.727 |
| 11 | -0.523 | -0.034 | 0.364 | 0.002 |