RUNX1_HUMAN.H10DI.A motif - HOmo sapiens COmprehensive MOdel COllection

Model info

Transcription factor

RUNX1

Model

RUNX1_HUMAN.H10DI.A

Model type

Dinucleotide PWM

LOGO

LOGO (reverse complement)

Origin

ChIP-Seq

Model length

12

Quality

A

Consensus

nYTGTGGTYWnn

wAUC

0.9293809133160168

Best AUC

0.933601646339997

Benchmark datasets

3

Aligned words

531

TF family

Runt-related factors{6.4.1}

TF subfamily

Runx1 (PEBP2alphaB, CBF-alpha2, AML-1){6.4.1.0.2}

HGNC

10471

EntrezGene

861

UniProt ID

RUNX1_HUMAN

UniProt AC

Q01196

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	7.2521
0.0005	9.7781
0.0001	14.5714

PCM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	9.995	24.826	3.022	30.097	7.463	71.475	2.912	57.739	23.957	75.575	1.971	39.266	2.895	63.933	7.564	77.312
02	4.737	0.0	1.088	38.484	2.996	4.062	0.987	227.762	0.0	0.0	0.0	15.469	2.957	2.843	5.356	193.258
03	0.0	0.0	10.691	0.0	0.0	0.0	5.987	0.918	0.0	1.088	6.344	0.0	0.0	0.947	472.182	1.843
04	0.0	0.0	0.0	0.0	0.0	0.0	0.0	2.035	4.858	120.595	1.835	367.915	0.0	0.0	0.0	2.762
05	0.0	0.0	4.858	0.0	0.0	0.0	120.595	0.0	0.0	0.0	1.835	0.0	0.0	0.0	372.712	0.0
06	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	499.092	0.908	0.0	0.0	0.0	0.0
07	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.961	36.602	15.841	445.688	0.0	0.0	0.908	0.0
08	0.0	0.0	0.961	0.0	0.0	5.745	0.0	30.856	0.0	4.84	0.964	10.946	10.326	105.118	12.06	318.183
09	6.537	0.0	0.0	3.789	77.833	1.889	8.164	27.817	8.016	0.0	5.969	0.0	78.386	18.234	35.469	227.896
10	41.589	35.32	75.264	18.6	2.842	10.411	3.962	2.907	6.617	14.972	16.137	11.876	22.312	66.736	76.372	94.082
11	19.188	10.506	34.047	9.618	31.241	40.725	4.858	50.615	34.82	49.265	54.149	33.502	14.725	32.123	44.605	36.013

PWM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	-1.114	-0.227	-2.227	-0.037	-1.394	0.82	-2.26	0.608	-0.262	0.876	-2.596	0.226	-2.265	0.71	-1.381	0.898
02	-1.82	-4.4	-3.064	0.206	-2.235	-1.961	-3.135	1.976	-4.4	-4.4	-4.4	-0.691	-2.247	-2.282	-1.706	1.812
03	-4.4	-4.4	-1.049	-4.4	-4.4	-4.4	-1.602	-3.187	-4.4	-3.064	-1.548	-4.4	-4.4	-3.165	2.704	-2.652
04	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-2.569	-1.797	1.341	-2.655	2.455	-4.4	-4.4	-4.4	-2.307
05	-4.4	-4.4	-1.797	-4.4	-4.4	-4.4	1.341	-4.4	-4.4	-4.4	-2.655	-4.4	-4.4	-4.4	2.467	-4.4
06	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	2.759	-3.195	-4.4	-4.4	-4.4	-4.4
07	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-3.155	0.156	-0.668	2.646	-4.4	-4.4	-3.195	-4.4
08	-4.4	-4.4	-3.155	-4.4	-4.4	-1.641	-4.4	-0.013	-4.4	-1.8	-3.153	-1.027	-1.083	1.204	-0.933	2.309
09	-1.519	-4.4	-4.4	-2.025	0.905	-2.631	-1.308	-0.115	-1.326	-4.4	-1.605	-4.4	0.912	-0.53	0.125	1.976
10	0.283	0.121	0.872	-0.511	-2.282	-1.075	-1.984	-2.262	-1.508	-0.723	-0.649	-0.948	-0.332	0.752	0.886	1.094
11	-0.48	-1.066	0.085	-1.151	-0.0	0.262	-1.797	0.478	0.107	0.451	0.545	0.069	-0.739	0.027	0.352	0.14