Model info
Transcription factorRorc
ModelRORG_MOUSE.H10MO.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length13
Quality
C
ConsensusnAAWvhAGGTCAG
wAUC
Best AUC
Benchmark datasets
Aligned words7
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyROR (NR1F){2.1.2.6}
MGI104856
EntrezGene19885
UniProt IDRORG_MOUSE
UniProt ACP51450
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.7482
0.0005 5.5201
0.0001 7.0981
PCM
ACGT
012.4670.2872.1232.123
023.7870.00.03.213
037.00.00.00.0
043.7870.01.0332.18
051.0331.0334.9340.0
061.0331.0330.04.934
074.0160.02.9840.0
080.00.07.00.0
090.00.07.00.0
100.00.00.07.0
110.06.1970.00.803
127.00.00.00.0
131.320.2875.1070.287
PWM
ACGT
010.278-1.0620.1540.154
020.647-1.525-1.5250.503
031.208-1.525-1.525-1.525
040.647-1.525-0.3870.176
05-0.387-0.3870.885-1.525
06-0.387-0.387-1.5250.885
070.7-1.5250.439-1.525
08-1.525-1.5251.208-1.525
09-1.525-1.5251.208-1.525
10-1.525-1.525-1.5251.208
11-1.5251.095-1.525-0.55
121.208-1.525-1.525-1.525
13-0.214-1.0620.917-1.062