Transcription factor | Rorc | ||||||||
Model | RORG_MOUSE.H10MO.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 13 | ||||||||
Quality | C | ||||||||
Consensus | nAAWvhAGGTCAG | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 7 | ||||||||
TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
TF subfamily | ROR (NR1F){2.1.2.6} | ||||||||
MGI | 104856 | ||||||||
EntrezGene | 19885 | ||||||||
UniProt ID | RORG_MOUSE | ||||||||
UniProt AC | P51450 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 2.467 | 0.287 | 2.123 | 2.123 |
02 | 3.787 | 0.0 | 0.0 | 3.213 |
03 | 7.0 | 0.0 | 0.0 | 0.0 |
04 | 3.787 | 0.0 | 1.033 | 2.18 |
05 | 1.033 | 1.033 | 4.934 | 0.0 |
06 | 1.033 | 1.033 | 0.0 | 4.934 |
07 | 4.016 | 0.0 | 2.984 | 0.0 |
08 | 0.0 | 0.0 | 7.0 | 0.0 |
09 | 0.0 | 0.0 | 7.0 | 0.0 |
10 | 0.0 | 0.0 | 0.0 | 7.0 |
11 | 0.0 | 6.197 | 0.0 | 0.803 |
12 | 7.0 | 0.0 | 0.0 | 0.0 |
13 | 1.32 | 0.287 | 5.107 | 0.287 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.278 | -1.062 | 0.154 | 0.154 |
02 | 0.647 | -1.525 | -1.525 | 0.503 |
03 | 1.208 | -1.525 | -1.525 | -1.525 |
04 | 0.647 | -1.525 | -0.387 | 0.176 |
05 | -0.387 | -0.387 | 0.885 | -1.525 |
06 | -0.387 | -0.387 | -1.525 | 0.885 |
07 | 0.7 | -1.525 | 0.439 | -1.525 |
08 | -1.525 | -1.525 | 1.208 | -1.525 |
09 | -1.525 | -1.525 | 1.208 | -1.525 |
10 | -1.525 | -1.525 | -1.525 | 1.208 |
11 | -1.525 | 1.095 | -1.525 | -0.55 |
12 | 1.208 | -1.525 | -1.525 | -1.525 |
13 | -0.214 | -1.062 | 0.917 | -1.062 |