Model info
| Transcription factor | Rora | ||||||||
| Model | RORA_MOUSE.H10MO.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 12 | ||||||||
| Quality | B | ||||||||
| Consensus | dWAAbTAGGTCA | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 115 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
| TF subfamily | ROR (NR1F){2.1.2.6} | ||||||||
| MGI | 104661 | ||||||||
| EntrezGene | 19883 | ||||||||
| UniProt ID | RORA_MOUSE | ||||||||
| UniProt AC | P51448 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 51.571 | 8.998 | 24.117 | 29.356 |
| 02 | 51.614 | 2.247 | 11.925 | 48.254 |
| 03 | 104.312 | 1.114 | 4.363 | 4.252 |
| 04 | 67.403 | 0.0 | 0.0 | 46.638 |
| 05 | 8.246 | 46.228 | 34.158 | 25.41 |
| 06 | 9.796 | 3.5 | 5.747 | 94.998 |
| 07 | 91.455 | 0.0 | 22.586 | 0.0 |
| 08 | 0.0 | 0.0 | 114.041 | 0.0 |
| 09 | 0.0 | 0.0 | 114.041 | 0.0 |
| 10 | 0.0 | 0.0 | 0.0 | 114.041 |
| 11 | 0.0 | 113.261 | 0.0 | 0.78 |
| 12 | 114.041 | 0.0 | 0.0 | 0.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.575 | -1.07 | -0.16 | 0.028 |
| 02 | 0.576 | -2.158 | -0.818 | 0.51 |
| 03 | 1.268 | -2.559 | -1.678 | -1.698 |
| 04 | 0.837 | -3.222 | -3.222 | 0.477 |
| 05 | -1.147 | 0.468 | 0.174 | -0.11 |
| 06 | -0.995 | -1.847 | -1.455 | 1.175 |
| 07 | 1.138 | -3.222 | -0.223 | -3.222 |
| 08 | -3.222 | -3.222 | 1.356 | -3.222 |
| 09 | -3.222 | -3.222 | 1.356 | -3.222 |
| 10 | -3.222 | -3.222 | -3.222 | 1.356 |
| 11 | -3.222 | 1.349 | -3.222 | -2.716 |
| 12 | 1.356 | -3.222 | -3.222 | -3.222 |