Model info
| Transcription factor | RHOXF1 | ||||||||
| Model | RHXF1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | nvbGGAThWdv | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 3731 | ||||||||
| TF family | Paired-related HD factors{3.1.3} | ||||||||
| TF subfamily | RHOX{3.1.3.23} | ||||||||
| HGNC | 29993 | ||||||||
| EntrezGene | 158800 | ||||||||
| UniProt ID | RHXF1_HUMAN | ||||||||
| UniProt AC | Q8NHV9 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1013.166 | 1111.182 | 871.501 | 571.884 |
| 02 | 1153.47 | 526.906 | 1449.459 | 437.898 |
| 03 | 389.216 | 405.249 | 2002.654 | 770.615 |
| 04 | 96.922 | 38.613 | 3396.236 | 35.962 |
| 05 | 6.008 | 4.595 | 3539.639 | 17.492 |
| 06 | 2784.027 | 656.856 | 111.652 | 15.198 |
| 07 | 26.682 | 16.079 | 23.318 | 3501.654 |
| 08 | 535.84 | 1311.678 | 194.855 | 1525.36 |
| 09 | 2663.606 | 142.475 | 223.033 | 538.619 |
| 10 | 1277.343 | 397.0 | 850.519 | 1042.871 |
| 11 | 576.855 | 1540.093 | 1013.516 | 437.27 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.127 | 0.219 | -0.023 | -0.443 |
| 02 | 0.257 | -0.525 | 0.485 | -0.709 |
| 03 | -0.826 | -0.786 | 0.808 | -0.146 |
| 04 | -2.201 | -3.09 | 1.335 | -3.158 |
| 05 | -4.71 | -4.903 | 1.377 | -3.823 |
| 06 | 1.137 | -0.305 | -2.062 | -3.948 |
| 07 | -3.438 | -3.898 | -3.562 | 1.366 |
| 08 | -0.508 | 0.385 | -1.513 | 0.536 |
| 09 | 1.093 | -1.822 | -1.379 | -0.503 |
| 10 | 0.358 | -0.807 | -0.047 | 0.156 |
| 11 | -0.435 | 0.545 | 0.128 | -0.71 |