Model info
| Transcription factor | RFX4 | ||||||||
| Model | RFX4_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 15 | ||||||||
| Quality | D | ||||||||
| Consensus | bGTTGCCATGGhWAY | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 2791 | ||||||||
| TF family | RFX-related factors{3.3.3} | ||||||||
| TF subfamily | RFX4{3.3.3.0.4} | ||||||||
| HGNC | 9985 | ||||||||
| EntrezGene | 5992 | ||||||||
| UniProt ID | RFX4_HUMAN | ||||||||
| UniProt AC | Q33E94 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 316.75 | 1009.75 | 954.75 | 494.75 |
| 02 | 86.25 | 64.25 | 2559.25 | 66.25 |
| 03 | 12.75 | 30.75 | 21.75 | 2710.75 |
| 04 | 180.75 | 113.75 | 17.75 | 2463.75 |
| 05 | 279.5 | 22.5 | 2336.5 | 137.5 |
| 06 | 1.0 | 2112.0 | 28.0 | 635.0 |
| 07 | 0.0 | 2250.0 | 2.0 | 524.0 |
| 08 | 2443.0 | 56.0 | 129.0 | 148.0 |
| 09 | 140.0 | 48.0 | 216.0 | 2372.0 |
| 10 | 222.0 | 24.0 | 2528.0 | 2.0 |
| 11 | 266.5 | 92.5 | 2382.5 | 34.5 |
| 12 | 434.5 | 792.5 | 114.5 | 1434.5 |
| 13 | 1327.25 | 60.25 | 437.25 | 951.25 |
| 14 | 2365.25 | 193.25 | 99.25 | 118.25 |
| 15 | 258.0 | 1846.0 | 235.0 | 437.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.781 | 0.374 | 0.318 | -0.337 |
| 02 | -2.065 | -2.352 | 1.303 | -2.322 |
| 03 | -3.855 | -3.057 | -3.378 | 1.36 |
| 04 | -1.337 | -1.794 | -3.563 | 1.265 |
| 05 | -0.905 | -3.347 | 1.212 | -1.607 |
| 06 | -5.453 | 1.111 | -3.145 | -0.089 |
| 07 | -5.861 | 1.174 | -5.163 | -0.28 |
| 08 | 1.256 | -2.485 | -1.67 | -1.535 |
| 09 | -1.59 | -2.634 | -1.161 | 1.227 |
| 10 | -1.134 | -3.288 | 1.291 | -5.163 |
| 11 | -0.953 | -1.997 | 1.231 | -2.948 |
| 12 | -0.467 | 0.132 | -1.788 | 0.725 |
| 13 | 0.647 | -2.414 | -0.46 | 0.315 |
| 14 | 1.224 | -1.271 | -1.928 | -1.756 |
| 15 | -0.985 | 0.977 | -1.077 | -0.461 |