Model info
| Transcription factor | RFX2 | ||||||||
| Model | RFX2_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 22 | ||||||||
| Quality | C | ||||||||
| Consensus | bbbbSbGTTGCCRKGGvRMCvS | ||||||||
| wAUC | 0.9405754272453767 | ||||||||
| Best AUC | 0.9405754272453767 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 385 | ||||||||
| TF family | RFX-related factors{3.3.3} | ||||||||
| TF subfamily | RFX2{3.3.3.0.2} | ||||||||
| HGNC | 9983 | ||||||||
| EntrezGene | 5990 | ||||||||
| UniProt ID | RFX2_HUMAN | ||||||||
| UniProt AC | P48378 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 40.758 | 127.611 | 169.921 | 50.355 |
| 02 | 38.594 | 154.963 | 129.927 | 65.161 |
| 03 | 32.858 | 187.757 | 113.378 | 54.652 |
| 04 | 30.364 | 167.885 | 146.038 | 44.358 |
| 05 | 27.793 | 233.279 | 76.562 | 51.012 |
| 06 | 30.823 | 140.427 | 159.442 | 57.953 |
| 07 | 1.955 | 0.0 | 386.69 | 0.0 |
| 08 | 0.0 | 14.744 | 0.825 | 373.076 |
| 09 | 8.009 | 48.339 | 0.0 | 332.297 |
| 10 | 34.165 | 6.932 | 323.74 | 23.808 |
| 11 | 0.0 | 369.92 | 0.0 | 18.725 |
| 12 | 0.0 | 305.248 | 0.0 | 83.398 |
| 13 | 293.622 | 29.664 | 36.856 | 28.503 |
| 14 | 63.993 | 9.012 | 100.366 | 215.273 |
| 15 | 13.354 | 1.094 | 374.198 | 0.0 |
| 16 | 35.774 | 27.632 | 321.345 | 3.895 |
| 17 | 104.996 | 159.49 | 70.128 | 54.031 |
| 18 | 174.568 | 17.299 | 177.09 | 19.688 |
| 19 | 285.315 | 68.612 | 27.664 | 7.054 |
| 20 | 17.797 | 320.284 | 24.159 | 26.406 |
| 21 | 61.631 | 123.123 | 167.621 | 36.271 |
| 22 | 65.348 | 91.235 | 217.367 | 14.695 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.848 | 0.269 | 0.552 | -0.643 |
| 02 | -0.901 | 0.461 | 0.287 | -0.392 |
| 03 | -1.055 | 0.651 | 0.152 | -0.564 |
| 04 | -1.13 | 0.541 | 0.402 | -0.766 |
| 05 | -1.215 | 0.867 | -0.234 | -0.631 |
| 06 | -1.116 | 0.364 | 0.489 | -0.507 |
| 07 | -3.354 | -4.192 | 1.37 | -4.192 |
| 08 | -4.192 | -1.804 | -3.752 | 1.334 |
| 09 | -2.34 | -0.683 | -4.192 | 1.219 |
| 10 | -1.018 | -2.461 | 1.193 | -1.361 |
| 11 | -4.192 | 1.326 | -4.192 | -1.585 |
| 12 | -4.192 | 1.134 | -4.192 | -0.15 |
| 13 | 1.096 | -1.153 | -0.945 | -1.191 |
| 14 | -0.41 | -2.24 | 0.032 | 0.787 |
| 15 | -1.894 | -3.642 | 1.337 | -4.192 |
| 16 | -0.974 | -1.22 | 1.186 | -2.908 |
| 17 | 0.076 | 0.49 | -0.32 | -0.575 |
| 18 | 0.579 | -1.658 | 0.593 | -1.539 |
| 19 | 1.067 | -0.342 | -1.219 | -2.446 |
| 20 | -1.632 | 1.182 | -1.347 | -1.263 |
| 21 | -0.447 | 0.234 | 0.539 | -0.96 |
| 22 | -0.389 | -0.062 | 0.797 | -1.807 |