Model info
| Transcription factor | RFX2 | ||||||||
| Model | RFX2_HUMAN.H10DI.C | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 23 | ||||||||
| Quality | C | ||||||||
| Consensus | vSbGTTGCCMKGGvRMCvvvvvv | ||||||||
| wAUC | 0.9498291898021778 | ||||||||
| Best AUC | 0.9498291898021778 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 330 | ||||||||
| TF family | RFX-related factors{3.3.3} | ||||||||
| TF subfamily | RFX2{3.3.3.0.2} | ||||||||
| HGNC | 9983 | ||||||||
| EntrezGene | 5990 | ||||||||
| UniProt ID | RFX2_HUMAN | ||||||||
| UniProt AC | P48378 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 2.276 | 29.952 | 17.783 | 6.171 | 5.253 | 57.067 | 23.718 | 14.975 | 7.109 | 87.667 | 28.498 | 10.194 | 1.16 | 29.318 | 8.902 | 7.106 |
| 02 | 0.0 | 2.967 | 9.311 | 3.521 | 16.167 | 59.447 | 85.436 | 42.954 | 4.112 | 48.069 | 20.739 | 5.981 | 3.145 | 6.108 | 27.312 | 1.882 |
| 03 | 0.0 | 0.0 | 23.424 | 0.0 | 0.0 | 0.0 | 115.801 | 0.791 | 0.0 | 0.0 | 142.798 | 0.0 | 0.0 | 0.0 | 54.337 | 0.0 |
| 04 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.842 | 0.954 | 331.563 | 0.0 | 0.0 | 0.0 | 0.791 |
| 05 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.842 | 0.0 | 0.0 | 0.0 | 0.954 | 4.696 | 33.616 | 2.966 | 291.074 |
| 06 | 0.827 | 0.0 | 3.004 | 0.865 | 0.0 | 0.0 | 30.759 | 2.857 | 0.0 | 0.0 | 2.966 | 0.0 | 21.14 | 2.342 | 252.626 | 19.762 |
| 07 | 0.0 | 21.967 | 0.0 | 0.0 | 0.0 | 2.342 | 0.0 | 0.0 | 0.0 | 277.955 | 0.0 | 11.401 | 0.0 | 23.484 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 277.631 | 0.0 | 48.117 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 9.385 | 0.0 | 2.016 |
| 09 | 0.0 | 0.0 | 0.0 | 0.0 | 211.19 | 27.291 | 22.354 | 26.181 | 0.0 | 0.0 | 0.0 | 0.0 | 44.681 | 1.008 | 3.66 | 0.785 |
| 10 | 30.592 | 6.279 | 46.753 | 172.247 | 5.245 | 2.97 | 13.387 | 6.695 | 0.812 | 2.04 | 11.945 | 11.216 | 12.373 | 0.0 | 7.367 | 7.226 |
| 11 | 0.955 | 0.0 | 48.068 | 0.0 | 1.876 | 0.0 | 9.414 | 0.0 | 2.804 | 1.094 | 75.555 | 0.0 | 13.94 | 0.0 | 183.445 | 0.0 |
| 12 | 0.0 | 0.0 | 19.574 | 0.0 | 0.0 | 0.0 | 1.094 | 0.0 | 34.182 | 17.219 | 264.226 | 0.853 | 0.0 | 0.0 | 0.0 | 0.0 |
| 13 | 0.0 | 21.227 | 12.955 | 0.0 | 8.959 | 3.137 | 5.124 | 0.0 | 79.687 | 118.495 | 43.218 | 43.496 | 0.0 | 0.0 | 0.853 | 0.0 |
| 14 | 25.808 | 1.968 | 58.94 | 1.929 | 54.904 | 1.936 | 77.423 | 8.596 | 40.623 | 6.353 | 13.275 | 1.899 | 10.134 | 1.058 | 26.306 | 5.998 |
| 15 | 81.242 | 28.433 | 19.975 | 1.819 | 7.198 | 2.191 | 1.927 | 0.0 | 151.729 | 17.884 | 5.221 | 1.11 | 7.821 | 6.263 | 1.57 | 2.766 |
| 16 | 8.72 | 221.484 | 3.02 | 14.766 | 0.9 | 38.924 | 10.811 | 4.138 | 1.128 | 23.544 | 2.97 | 1.05 | 1.17 | 1.736 | 0.862 | 1.927 |
| 17 | 0.0 | 9.159 | 2.759 | 0.0 | 43.847 | 79.35 | 130.251 | 32.239 | 0.903 | 5.702 | 11.058 | 0.0 | 1.883 | 8.183 | 11.814 | 0.0 |
| 18 | 6.412 | 2.11 | 37.294 | 0.817 | 29.371 | 9.181 | 55.975 | 7.868 | 29.091 | 54.937 | 66.594 | 5.261 | 1.081 | 4.216 | 25.058 | 1.883 |
| 19 | 9.556 | 17.66 | 36.726 | 2.014 | 10.45 | 17.757 | 39.057 | 3.18 | 22.841 | 54.069 | 96.724 | 11.286 | 1.03 | 5.862 | 8.171 | 0.766 |
| 20 | 12.727 | 14.513 | 15.54 | 1.096 | 14.36 | 27.88 | 41.052 | 12.057 | 34.959 | 53.102 | 70.394 | 22.223 | 2.849 | 4.05 | 3.948 | 6.399 |
| 21 | 9.988 | 17.727 | 33.152 | 4.029 | 18.113 | 26.353 | 43.511 | 11.567 | 14.374 | 47.059 | 54.735 | 14.767 | 5.093 | 13.295 | 20.052 | 3.335 |
| 22 | 14.339 | 9.135 | 22.314 | 1.78 | 18.234 | 38.142 | 38.839 | 9.218 | 12.085 | 51.249 | 76.894 | 11.222 | 0.0 | 17.25 | 12.157 | 4.291 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | -2.094 | 0.347 | -0.167 | -1.188 | -1.339 | 0.986 | 0.116 | -0.335 | -1.054 | 1.413 | 0.297 | -0.708 | -2.644 | 0.325 | -0.839 | -1.054 |
| 02 | -4.076 | -1.862 | -0.796 | -1.708 | -0.26 | 1.026 | 1.387 | 0.703 | -1.566 | 0.815 | -0.016 | -1.217 | -1.81 | -1.198 | 0.256 | -2.256 |
| 03 | -4.076 | -4.076 | 0.104 | -4.076 | -4.076 | -4.076 | 1.69 | -2.921 | -4.076 | -4.076 | 1.899 | -4.076 | -4.076 | -4.076 | 0.937 | -4.076 |
| 04 | -4.076 | -4.076 | -4.076 | -4.076 | -4.076 | -4.076 | -4.076 | -4.076 | -4.076 | -1.628 | -2.789 | 2.74 | -4.076 | -4.076 | -4.076 | -2.921 |
| 05 | -4.076 | -4.076 | -4.076 | -4.076 | -4.076 | -4.076 | -4.076 | -1.628 | -4.076 | -4.076 | -4.076 | -2.789 | -1.444 | 0.461 | -1.862 | 2.61 |
| 06 | -2.89 | -4.076 | -1.851 | -2.859 | -4.076 | -4.076 | 0.373 | -1.896 | -4.076 | -4.076 | -1.862 | -4.076 | 0.003 | -2.07 | 2.468 | -0.063 |
| 07 | -4.076 | 0.041 | -4.076 | -4.076 | -4.076 | -2.07 | -4.076 | -4.076 | -4.076 | 2.564 | -4.076 | -0.6 | -4.076 | 0.107 | -4.076 | -4.076 |
| 08 | -4.076 | -4.076 | -4.076 | -4.076 | -4.076 | 2.563 | -4.076 | 0.816 | -4.076 | -4.076 | -4.076 | -4.076 | -4.076 | -0.788 | -4.076 | -2.198 |
| 09 | -4.076 | -4.076 | -4.076 | -4.076 | 2.289 | 0.255 | 0.058 | 0.214 | -4.076 | -4.076 | -4.076 | -4.076 | 0.743 | -2.749 | -1.673 | -2.927 |
| 10 | 0.368 | -1.172 | 0.788 | 2.086 | -1.341 | -1.861 | -0.444 | -1.111 | -2.903 | -2.188 | -0.555 | -0.616 | -0.521 | -4.076 | -1.02 | -1.038 |
| 11 | -2.789 | -4.076 | 0.815 | -4.076 | -2.259 | -4.076 | -0.785 | -4.076 | -1.912 | -2.688 | 1.265 | -4.076 | -0.405 | -4.076 | 2.149 | -4.076 |
| 12 | -4.076 | -4.076 | -0.072 | -4.076 | -4.076 | -4.076 | -2.688 | -4.076 | 0.477 | -0.198 | 2.513 | -2.869 | -4.076 | -4.076 | -4.076 | -4.076 |
| 13 | -4.076 | 0.007 | -0.476 | -4.076 | -0.833 | -1.812 | -1.363 | -4.076 | 1.318 | 1.713 | 0.71 | 0.716 | -4.076 | -4.076 | -2.869 | -4.076 |
| 14 | 0.2 | -2.218 | 1.018 | -2.235 | 0.947 | -2.232 | 1.289 | -0.872 | 0.648 | -1.16 | -0.452 | -2.248 | -0.714 | -2.713 | 0.218 | -1.215 |
| 15 | 1.337 | 0.295 | -0.053 | -2.284 | -1.042 | -2.127 | -2.236 | -4.076 | 1.959 | -0.161 | -1.345 | -2.677 | -0.963 | -1.174 | -2.406 | -1.924 |
| 16 | -0.859 | 2.337 | -1.846 | -0.348 | -2.831 | 0.606 | -0.651 | -1.561 | -2.665 | 0.109 | -1.861 | -2.719 | -2.637 | -2.323 | -2.861 | -2.236 |
| 17 | -4.076 | -0.811 | -1.926 | -4.076 | 0.724 | 1.313 | 1.807 | 0.419 | -2.828 | -1.262 | -0.63 | -4.076 | -2.255 | -0.92 | -0.565 | -4.076 |
| 18 | -1.152 | -2.159 | 0.563 | -2.899 | 0.327 | -0.809 | 0.966 | -0.957 | 0.318 | 0.948 | 1.139 | -1.338 | -2.697 | -1.543 | 0.171 | -2.255 |
| 19 | -0.771 | -0.173 | 0.548 | -2.199 | -0.684 | -0.168 | 0.609 | -1.8 | 0.079 | 0.932 | 1.511 | -0.61 | -2.733 | -1.236 | -0.921 | -2.943 |
| 20 | -0.493 | -0.365 | -0.298 | -2.686 | -0.376 | 0.276 | 0.659 | -0.546 | 0.499 | 0.914 | 1.194 | 0.052 | -1.898 | -1.58 | -1.604 | -1.154 |
| 21 | -0.728 | -0.17 | 0.447 | -1.585 | -0.149 | 0.22 | 0.716 | -0.586 | -0.375 | 0.794 | 0.944 | -0.348 | -1.368 | -0.451 | -0.049 | -1.757 |
| 22 | -0.377 | -0.814 | 0.056 | -2.302 | -0.142 | 0.586 | 0.604 | -0.805 | -0.543 | 0.879 | 1.282 | -0.615 | -4.076 | -0.196 | -0.538 | -1.527 |