Model info
Transcription factorRel
ModelREL_MOUSE.H10MO.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length12
Quality
C
ConsensusdKGGRnWTTCCv
wAUC
Best AUC
Benchmark datasets
Aligned words75
TF familyNF-kappaB-related factors{6.1.1}
TF subfamilyNF-kappaB p65 subunit-like factors{6.1.1.2}
MGI97897
EntrezGene
UniProt IDREL_MOUSE
UniProt ACP15307
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.8181
0.0005 5.6351
0.0001 7.2411
PCM
ACGT
0118.7247.12523.12125.377
022.11310.66139.72621.847
030.01.8571.670.827
040.7352.38864.0337.191
0525.454.14641.3393.412
0623.22221.77816.3213.026
0723.0613.5951.56246.128
082.1130.00.072.234
090.06.9942.11365.24
102.20555.0970.73516.31
110.067.5360.06.81
1223.79628.46813.7588.325
PWM
ACGT
010.007-0.8740.2070.297
02-1.819-0.5160.730.153
03-2.904-1.9051.308-2.335
04-2.384-1.7361.197-0.866
050.299-1.3260.769-1.477
060.2120.15-0.122-0.332
070.205-1.437-2.0080.876
08-1.819-2.904-2.9041.316
09-2.904-0.89-1.8191.216
10-1.791.05-2.384-0.123
11-2.9041.25-2.904-0.914
120.2350.407-0.282-0.738