Model info
| Transcription factor | Rarg | ||||||||
| Model | RARG_MOUSE.H10MO.S | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 7 | ||||||||
| Quality | S | ||||||||
| Consensus | RAGGTCA | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 32 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
| TF subfamily | Retinoic acid receptors (NR1B){2.1.2.1} | ||||||||
| MGI | 97858 | ||||||||
| EntrezGene | 19411 | ||||||||
| UniProt ID | RARG_MOUSE | ||||||||
| UniProt AC | P18911 | ||||||||
| Comment | Secondary motif. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 8.593 | 4.175 | 15.273 | 0.727 |
| 02 | 22.842 | 0.0 | 5.926 | 0.0 |
| 03 | 0.0 | 0.0 | 28.768 | 0.0 |
| 04 | 0.0 | 0.0 | 20.795 | 7.973 |
| 05 | 0.0 | 0.0 | 0.0 | 28.768 |
| 06 | 0.0 | 28.768 | 0.0 | 0.0 |
| 07 | 26.721 | 2.047 | 0.0 | 0.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.161 | -0.471 | 0.696 | -1.634 |
| 02 | 1.081 | -2.258 | -0.172 | -2.258 |
| 03 | -2.258 | -2.258 | 1.305 | -2.258 |
| 04 | -2.258 | -2.258 | 0.991 | 0.093 |
| 05 | -2.258 | -2.258 | -2.258 | 1.305 |
| 06 | -2.258 | 1.305 | -2.258 | -2.258 |
| 07 | 1.233 | -1.023 | -2.258 | -2.258 |