Transcription factor | RARB | ||||||||
Model | RARB_HUMAN.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 11 | ||||||||
Quality | D | ||||||||
Consensus | vAGGTCAnvRv | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 25 | ||||||||
TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
TF subfamily | Retinoic acid receptors (NR1B){2.1.2.1} | ||||||||
HGNC | 9865 | ||||||||
EntrezGene | 5915 | ||||||||
UniProt ID | RARB_HUMAN | ||||||||
UniProt AC | P10826 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 3.825 | 6.722 | 9.909 | 0.811 |
02 | 17.442 | 0.0 | 3.825 | 0.0 |
03 | 0.0 | 0.0 | 21.267 | 0.0 |
04 | 0.0 | 0.0 | 20.224 | 1.043 |
05 | 0.0 | 0.0 | 0.0 | 21.267 |
06 | 0.0 | 21.267 | 0.0 | 0.0 |
07 | 21.267 | 0.0 | 0.0 | 0.0 |
08 | 4.752 | 4.288 | 8.402 | 3.825 |
09 | 6.722 | 4.288 | 8.055 | 2.202 |
10 | 6.954 | 5.331 | 8.982 | 0.0 |
11 | 5.36 | 6.983 | 6.809 | 2.115 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.282 | 0.208 | 0.563 | -1.351 |
02 | 1.097 | -2.074 | -0.282 | -2.074 |
03 | -2.074 | -2.074 | 1.287 | -2.074 |
04 | -2.074 | -2.074 | 1.239 | -1.213 |
05 | -2.074 | -2.074 | -2.074 | 1.287 |
06 | -2.074 | 1.287 | -2.074 | -2.074 |
07 | 1.287 | -2.074 | -2.074 | -2.074 |
08 | -0.098 | -0.185 | 0.41 | -0.282 |
09 | 0.208 | -0.185 | 0.372 | -0.718 |
10 | 0.238 | 0.002 | 0.472 | -2.074 |
11 | 0.007 | 0.242 | 0.219 | -0.748 |