Model info
| Transcription factor | RARB | ||||||||
| Model | RARB_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | vAGGTCAnvRv | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 25 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
| TF subfamily | Retinoic acid receptors (NR1B){2.1.2.1} | ||||||||
| HGNC | 9865 | ||||||||
| EntrezGene | 5915 | ||||||||
| UniProt ID | RARB_HUMAN | ||||||||
| UniProt AC | P10826 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.825 | 6.722 | 9.909 | 0.811 |
| 02 | 17.442 | 0.0 | 3.825 | 0.0 |
| 03 | 0.0 | 0.0 | 21.267 | 0.0 |
| 04 | 0.0 | 0.0 | 20.224 | 1.043 |
| 05 | 0.0 | 0.0 | 0.0 | 21.267 |
| 06 | 0.0 | 21.267 | 0.0 | 0.0 |
| 07 | 21.267 | 0.0 | 0.0 | 0.0 |
| 08 | 4.752 | 4.288 | 8.402 | 3.825 |
| 09 | 6.722 | 4.288 | 8.055 | 2.202 |
| 10 | 6.954 | 5.331 | 8.982 | 0.0 |
| 11 | 5.36 | 6.983 | 6.809 | 2.115 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.282 | 0.208 | 0.563 | -1.351 |
| 02 | 1.097 | -2.074 | -0.282 | -2.074 |
| 03 | -2.074 | -2.074 | 1.287 | -2.074 |
| 04 | -2.074 | -2.074 | 1.239 | -1.213 |
| 05 | -2.074 | -2.074 | -2.074 | 1.287 |
| 06 | -2.074 | 1.287 | -2.074 | -2.074 |
| 07 | 1.287 | -2.074 | -2.074 | -2.074 |
| 08 | -0.098 | -0.185 | 0.41 | -0.282 |
| 09 | 0.208 | -0.185 | 0.372 | -0.718 |
| 10 | 0.238 | 0.002 | 0.472 | -2.074 |
| 11 | 0.007 | 0.242 | 0.219 | -0.748 |