Model info
| Transcription factor | RARA | ||||||||
| Model | RARA_HUMAN.H10MO.S | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 7 | ||||||||
| Quality | S | ||||||||
| Consensus | vAGGTCA | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 77 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
| TF subfamily | Retinoic acid receptors (NR1B){2.1.2.1} | ||||||||
| HGNC | 9864 | ||||||||
| EntrezGene | 5914 | ||||||||
| UniProt ID | RARA_HUMAN | ||||||||
| UniProt AC | P10276 | ||||||||
| Comment | Secondary motif. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 11.094 | 19.557 | 22.621 | 4.716 |
| 02 | 57.988 | 0.0 | 0.0 | 0.0 |
| 03 | 0.0 | 0.0 | 57.988 | 0.0 |
| 04 | 0.0 | 0.0 | 57.988 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 57.988 |
| 06 | 0.0 | 57.988 | 0.0 | 0.0 |
| 07 | 57.988 | 0.0 | 0.0 | 0.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.248 | 0.282 | 0.421 | -0.996 |
| 02 | 1.336 | -2.727 | -2.727 | -2.727 |
| 03 | -2.727 | -2.727 | 1.336 | -2.727 |
| 04 | -2.727 | -2.727 | 1.336 | -2.727 |
| 05 | -2.727 | -2.727 | -2.727 | 1.336 |
| 06 | -2.727 | 1.336 | -2.727 | -2.727 |
| 07 | 1.336 | -2.727 | -2.727 | -2.727 |