Transcription factor | Ptf1a | ||||||||
Model | PTF1A_MOUSE.H10MO.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 21 | ||||||||
Quality | C | ||||||||
Consensus | nRRGARAnnbhMCASSTGYCM | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 10 | ||||||||
TF family | Tal-related factors{1.2.3} | ||||||||
TF subfamily | Twist-like factors{1.2.3.2} | ||||||||
MGI | 1328312 | ||||||||
EntrezGene | 19213 | ||||||||
UniProt ID | PTF1A_MOUSE | ||||||||
UniProt AC | Q9QX98 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 2.092 | 4.643 | 1.173 | 2.092 |
02 | 4.388 | 0.0 | 3.776 | 1.837 |
03 | 1.837 | 1.02 | 7.143 | 0.0 |
04 | 0.0 | 1.837 | 8.163 | 0.0 |
05 | 5.612 | 0.0 | 4.388 | 0.0 |
06 | 7.143 | 1.02 | 1.837 | 0.0 |
07 | 8.98 | 0.0 | 0.0 | 1.02 |
08 | 2.653 | 3.673 | 1.735 | 1.939 |
09 | 3.673 | 1.735 | 0.918 | 3.673 |
10 | 0.918 | 3.571 | 4.49 | 1.02 |
11 | 4.592 | 2.755 | 0.918 | 1.735 |
12 | 6.327 | 1.939 | 1.735 | 0.0 |
13 | 1.02 | 8.98 | 0.0 | 0.0 |
14 | 8.163 | 0.0 | 0.0 | 1.837 |
15 | 0.0 | 2.755 | 5.51 | 1.735 |
16 | 1.939 | 5.306 | 2.755 | 0.0 |
17 | 1.837 | 0.0 | 0.0 | 8.163 |
18 | 0.0 | 0.0 | 10.0 | 0.0 |
19 | 1.735 | 3.673 | 0.0 | 4.592 |
20 | 0.0 | 5.204 | 4.796 | 0.0 |
21 | 2.526 | 5.281 | 0.689 | 1.505 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.142 | 0.529 | -0.564 | -0.142 |
02 | 0.479 | -1.676 | 0.347 | -0.243 |
03 | -0.243 | -0.656 | 0.92 | -1.676 |
04 | -1.676 | -0.243 | 1.044 | -1.676 |
05 | 0.699 | -1.676 | 0.479 | -1.676 |
06 | 0.92 | -0.656 | -0.243 | -1.676 |
07 | 1.134 | -1.676 | -1.676 | -0.656 |
08 | 0.049 | 0.323 | -0.286 | -0.201 |
09 | 0.323 | -0.286 | -0.722 | 0.323 |
10 | -0.722 | 0.299 | 0.499 | -0.656 |
11 | 0.519 | 0.08 | -0.722 | -0.286 |
12 | 0.808 | -0.201 | -0.286 | -1.676 |
13 | -0.656 | 1.134 | -1.676 | -1.676 |
14 | 1.044 | -1.676 | -1.676 | -0.243 |
15 | -1.676 | 0.08 | 0.682 | -0.286 |
16 | -0.201 | 0.648 | 0.08 | -1.676 |
17 | -0.243 | -1.676 | -1.676 | 1.044 |
18 | -1.676 | -1.676 | 1.235 | -1.676 |
19 | -0.286 | 0.323 | -1.676 | 0.519 |
20 | -1.676 | 0.631 | 0.558 | -1.676 |
21 | 0.008 | 0.644 | -0.889 | -0.391 |