Model info
Transcription factorPtf1a
ModelPTF1A_MOUSE.H10MO.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length21
Quality
C
ConsensusnRRGARAnnbhMCASSTGYCM
wAUC
Best AUC
Benchmark datasets
Aligned words10
TF familyTal-related factors{1.2.3}
TF subfamilyTwist-like factors{1.2.3.2}
MGI1328312
EntrezGene19213
UniProt IDPTF1A_MOUSE
UniProt ACQ9QX98
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.6521
0.0005 5.4471
0.0001 7.1021
PCM
ACGT
012.0924.6431.1732.092
024.3880.03.7761.837
031.8371.027.1430.0
040.01.8378.1630.0
055.6120.04.3880.0
067.1431.021.8370.0
078.980.00.01.02
082.6533.6731.7351.939
093.6731.7350.9183.673
100.9183.5714.491.02
114.5922.7550.9181.735
126.3271.9391.7350.0
131.028.980.00.0
148.1630.00.01.837
150.02.7555.511.735
161.9395.3062.7550.0
171.8370.00.08.163
180.00.010.00.0
191.7353.6730.04.592
200.05.2044.7960.0
212.5265.2810.6891.505
PWM
ACGT
01-0.1420.529-0.564-0.142
020.479-1.6760.347-0.243
03-0.243-0.6560.92-1.676
04-1.676-0.2431.044-1.676
050.699-1.6760.479-1.676
060.92-0.656-0.243-1.676
071.134-1.676-1.676-0.656
080.0490.323-0.286-0.201
090.323-0.286-0.7220.323
10-0.7220.2990.499-0.656
110.5190.08-0.722-0.286
120.808-0.201-0.286-1.676
13-0.6561.134-1.676-1.676
141.044-1.676-1.676-0.243
15-1.6760.080.682-0.286
16-0.2010.6480.08-1.676
17-0.243-1.676-1.6761.044
18-1.676-1.6761.235-1.676
19-0.2860.323-1.6760.519
20-1.6760.6310.558-1.676
210.0080.644-0.889-0.391