Model info
| Transcription factor | PTF1A | ||||||||
| Model | PTF1A_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 21 | ||||||||
| Quality | C | ||||||||
| Consensus | nRRGARAnnbhMCASSTGYCM | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 10 | ||||||||
| TF family | Tal-related factors{1.2.3} | ||||||||
| TF subfamily | Twist-like factors{1.2.3.2} | ||||||||
| HGNC | 23734 | ||||||||
| EntrezGene | 256297 | ||||||||
| UniProt ID | PTF1A_HUMAN | ||||||||
| UniProt AC | Q7RTS3 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2.092 | 4.643 | 1.173 | 2.092 |
| 02 | 4.388 | 0.0 | 3.776 | 1.837 |
| 03 | 1.837 | 1.02 | 7.143 | 0.0 |
| 04 | 0.0 | 1.837 | 8.163 | 0.0 |
| 05 | 5.612 | 0.0 | 4.388 | 0.0 |
| 06 | 7.143 | 1.02 | 1.837 | 0.0 |
| 07 | 8.98 | 0.0 | 0.0 | 1.02 |
| 08 | 2.653 | 3.673 | 1.735 | 1.939 |
| 09 | 3.673 | 1.735 | 0.918 | 3.673 |
| 10 | 0.918 | 3.571 | 4.49 | 1.02 |
| 11 | 4.592 | 2.755 | 0.918 | 1.735 |
| 12 | 6.327 | 1.939 | 1.735 | 0.0 |
| 13 | 1.02 | 8.98 | 0.0 | 0.0 |
| 14 | 8.163 | 0.0 | 0.0 | 1.837 |
| 15 | 0.0 | 2.755 | 5.51 | 1.735 |
| 16 | 1.939 | 5.306 | 2.755 | 0.0 |
| 17 | 1.837 | 0.0 | 0.0 | 8.163 |
| 18 | 0.0 | 0.0 | 10.0 | 0.0 |
| 19 | 1.735 | 3.673 | 0.0 | 4.592 |
| 20 | 0.0 | 5.204 | 4.796 | 0.0 |
| 21 | 2.526 | 5.281 | 0.689 | 1.505 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.142 | 0.529 | -0.564 | -0.142 |
| 02 | 0.479 | -1.676 | 0.347 | -0.243 |
| 03 | -0.243 | -0.656 | 0.92 | -1.676 |
| 04 | -1.676 | -0.243 | 1.044 | -1.676 |
| 05 | 0.699 | -1.676 | 0.479 | -1.676 |
| 06 | 0.92 | -0.656 | -0.243 | -1.676 |
| 07 | 1.134 | -1.676 | -1.676 | -0.656 |
| 08 | 0.049 | 0.323 | -0.286 | -0.201 |
| 09 | 0.323 | -0.286 | -0.722 | 0.323 |
| 10 | -0.722 | 0.299 | 0.499 | -0.656 |
| 11 | 0.519 | 0.08 | -0.722 | -0.286 |
| 12 | 0.808 | -0.201 | -0.286 | -1.676 |
| 13 | -0.656 | 1.134 | -1.676 | -1.676 |
| 14 | 1.044 | -1.676 | -1.676 | -0.243 |
| 15 | -1.676 | 0.08 | 0.682 | -0.286 |
| 16 | -0.201 | 0.648 | 0.08 | -1.676 |
| 17 | -0.243 | -1.676 | -1.676 | 1.044 |
| 18 | -1.676 | -1.676 | 1.235 | -1.676 |
| 19 | -0.286 | 0.323 | -1.676 | 0.519 |
| 20 | -1.676 | 0.631 | 0.558 | -1.676 |
| 21 | 0.008 | 0.644 | -0.889 | -0.391 |