Model info
| Transcription factor | PRRX2 | ||||||||
| Model | PRRX2_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 7 | ||||||||
| Quality | C | ||||||||
| Consensus | hTAATTR | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 65 | ||||||||
| TF family | Paired-related HD factors{3.1.3} | ||||||||
| TF subfamily | PRRX{3.1.3.21} | ||||||||
| HGNC | 21338 | ||||||||
| EntrezGene | 51450 | ||||||||
| UniProt ID | PRRX2_HUMAN | ||||||||
| UniProt AC | Q99811 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 10.25 | 18.25 | 4.25 | 26.25 |
| 02 | 0.0 | 0.0 | 0.0 | 59.0 |
| 03 | 59.0 | 0.0 | 0.0 | 0.0 |
| 04 | 58.0 | 0.0 | 1.0 | 0.0 |
| 05 | 1.0 | 1.0 | 0.0 | 57.0 |
| 06 | 0.0 | 3.0 | 3.0 | 53.0 |
| 07 | 27.0 | 1.0 | 29.0 | 2.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.336 | 0.2 | -1.096 | 0.548 |
| 02 | -2.739 | -2.739 | -2.739 | 1.337 |
| 03 | 1.337 | -2.739 | -2.739 | -2.739 |
| 04 | 1.32 | -2.739 | -2.055 | -2.739 |
| 05 | -2.055 | -2.055 | -2.739 | 1.303 |
| 06 | -2.739 | -1.367 | -1.367 | 1.231 |
| 07 | 0.575 | -2.055 | 0.644 | -1.653 |