Model info
| Transcription factor | PROP1 | ||||||||
| Model | PROP1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 15 | ||||||||
| Quality | D | ||||||||
| Consensus | nAGnAAWTnAnATRd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 9 | ||||||||
| TF family | Paired-related HD factors{3.1.3} | ||||||||
| TF subfamily | PROP{3.1.3.20} | ||||||||
| HGNC | 9455 | ||||||||
| EntrezGene | 5626 | ||||||||
| UniProt ID | PROP1_HUMAN | ||||||||
| UniProt AC | O75360 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2.275 | 1.264 | 4.197 | 1.264 |
| 02 | 6.978 | 0.0 | 0.0 | 2.022 |
| 03 | 0.0 | 3.034 | 5.966 | 0.0 |
| 04 | 3.034 | 1.921 | 1.011 | 3.034 |
| 05 | 6.978 | 1.011 | 0.0 | 1.011 |
| 06 | 6.978 | 0.0 | 1.011 | 1.011 |
| 07 | 2.022 | 0.0 | 1.011 | 5.966 |
| 08 | 0.0 | 1.011 | 0.0 | 7.989 |
| 09 | 5.966 | 1.011 | 1.011 | 1.011 |
| 10 | 7.989 | 1.011 | 0.0 | 0.0 |
| 11 | 2.022 | 2.022 | 1.011 | 3.944 |
| 12 | 6.067 | 0.0 | 0.0 | 2.933 |
| 13 | 1.921 | 0.0 | 0.0 | 7.079 |
| 14 | 3.944 | 2.022 | 3.034 | 0.0 |
| 15 | 3.539 | 0.506 | 3.438 | 1.517 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.009 | -0.434 | 0.528 | -0.434 |
| 02 | 0.989 | -1.628 | -1.628 | -0.085 |
| 03 | -1.628 | 0.247 | 0.845 | -1.628 |
| 04 | 0.247 | -0.125 | -0.584 | 0.247 |
| 05 | 0.989 | -0.584 | -1.628 | -0.584 |
| 06 | 0.989 | -1.628 | -0.584 | -0.584 |
| 07 | -0.085 | -1.628 | -0.584 | 0.845 |
| 08 | -1.628 | -0.584 | -1.628 | 1.115 |
| 09 | 0.845 | -0.584 | -0.584 | -0.584 |
| 10 | 1.115 | -0.584 | -1.628 | -1.628 |
| 11 | -0.085 | -0.085 | -0.584 | 0.473 |
| 12 | 0.86 | -1.628 | -1.628 | 0.218 |
| 13 | -0.125 | -1.628 | -1.628 | 1.002 |
| 14 | 0.473 | -0.085 | 0.247 | -1.628 |
| 15 | 0.379 | -0.976 | 0.354 | -0.304 |