Model info
| Transcription factor | PGR | ||||||||
| Model | PRGR_HUMAN.H10MO.S | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 7 | ||||||||
| Quality | S | ||||||||
| Consensus | RGAACAb | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 40 | ||||||||
| TF family | Steroid hormone receptors (NR3){2.1.1} | ||||||||
| TF subfamily | GR-like receptors (NR3C){2.1.1.1} | ||||||||
| HGNC | 8910 | ||||||||
| EntrezGene | 5241 | ||||||||
| UniProt ID | PRGR_HUMAN | ||||||||
| UniProt AC | P06401 | ||||||||
| Comment | Secondary motif. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 25.565 | 0.0 | 7.478 | 4.957 |
| 02 | 0.0 | 0.87 | 34.696 | 2.435 |
| 03 | 27.13 | 0.0 | 9.304 | 1.565 |
| 04 | 38.0 | 0.0 | 0.0 | 0.0 |
| 05 | 0.783 | 37.217 | 0.0 | 0.0 |
| 06 | 33.391 | 0.0 | 0.0 | 4.609 |
| 07 | 5.87 | 7.174 | 14.304 | 10.652 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.933 | -2.438 | -0.216 | -0.574 |
| 02 | -2.438 | -1.767 | 1.23 | -1.135 |
| 03 | 0.991 | -2.438 | -0.019 | -1.437 |
| 04 | 1.319 | -2.438 | -2.438 | -2.438 |
| 05 | -1.817 | 1.298 | -2.438 | -2.438 |
| 06 | 1.192 | -2.438 | -2.438 | -0.635 |
| 07 | -0.429 | -0.253 | 0.379 | 0.105 |