Model info
| Transcription factor | Prdm1 | ||||||||
| Model | PRDM1_MOUSE.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Consensus | RRAAGKGAAAGKRv | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 856 | ||||||||
| TF family | More than 3 adjacent zinc finger factors{2.3.3} | ||||||||
| TF subfamily | PRDM1-like factors{2.3.3.12} | ||||||||
| MGI | 99655 | ||||||||
| EntrezGene | 12142 | ||||||||
| UniProt ID | PRDM1_MOUSE | ||||||||
| UniProt AC | Q60636 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 334.166 | 64.28 | 555.812 | 71.667 |
| 02 | 748.851 | 26.495 | 210.117 | 40.463 |
| 03 | 880.821 | 64.288 | 61.269 | 19.547 |
| 04 | 1013.928 | 4.532 | 6.102 | 1.363 |
| 05 | 6.899 | 2.412 | 1003.793 | 12.821 |
| 06 | 29.726 | 65.74 | 270.927 | 659.532 |
| 07 | 9.71 | 2.632 | 1008.766 | 4.816 |
| 08 | 1020.043 | 3.524 | 1.405 | 0.954 |
| 09 | 1007.7 | 3.585 | 13.867 | 0.774 |
| 10 | 1013.487 | 6.709 | 3.657 | 2.073 |
| 11 | 4.125 | 25.253 | 922.036 | 74.51 |
| 12 | 35.983 | 56.163 | 207.326 | 726.453 |
| 13 | 315.536 | 51.216 | 554.717 | 104.456 |
| 14 | 393.199 | 276.365 | 209.64 | 146.72 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.263 | -1.364 | 0.77 | -1.258 |
| 02 | 1.067 | -2.213 | -0.198 | -1.811 |
| 03 | 1.229 | -1.364 | -1.411 | -2.496 |
| 04 | 1.37 | -3.719 | -3.495 | -4.424 |
| 05 | -3.398 | -4.132 | 1.359 | -2.876 |
| 06 | -2.105 | -1.342 | 0.054 | 0.94 |
| 07 | -3.116 | -4.08 | 1.364 | -3.674 |
| 08 | 1.376 | -3.894 | -4.41 | -4.565 |
| 09 | 1.363 | -3.883 | -2.807 | -4.635 |
| 10 | 1.369 | -3.421 | -3.869 | -4.217 |
| 11 | -3.786 | -2.258 | 1.275 | -1.22 |
| 12 | -1.924 | -1.495 | -0.211 | 1.037 |
| 13 | 0.206 | -1.584 | 0.768 | -0.889 |
| 14 | 0.425 | 0.074 | -0.2 | -0.554 |