Model info
| Transcription factor | PRDM1 | ||||||||
| Model | PRDM1_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 14 | ||||||||
| Quality | C | ||||||||
| Consensus | dRMAGWGAAAGTdh | ||||||||
| wAUC | 0.9471947479063992 | ||||||||
| Best AUC | 0.9471947479063992 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 507 | ||||||||
| TF family | More than 3 adjacent zinc finger factors{2.3.3} | ||||||||
| TF subfamily | PRDM1-like factors{2.3.3.12} | ||||||||
| HGNC | 9346 | ||||||||
| EntrezGene | 639 | ||||||||
| UniProt ID | PRDM1_HUMAN | ||||||||
| UniProt AC | O75626 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 182.895 | 36.795 | 225.064 | 53.493 |
| 02 | 315.701 | 48.134 | 72.201 | 62.212 |
| 03 | 358.984 | 58.124 | 50.298 | 30.842 |
| 04 | 440.928 | 0.788 | 49.692 | 6.84 |
| 05 | 33.908 | 2.874 | 450.015 | 11.449 |
| 06 | 83.692 | 12.099 | 81.044 | 321.412 |
| 07 | 16.493 | 2.069 | 478.762 | 0.923 |
| 08 | 495.156 | 0.682 | 0.868 | 1.542 |
| 09 | 477.259 | 0.0 | 20.145 | 0.843 |
| 10 | 486.413 | 0.0 | 4.34 | 7.494 |
| 11 | 11.44 | 5.541 | 469.72 | 11.546 |
| 12 | 7.848 | 37.528 | 23.698 | 429.172 |
| 13 | 113.757 | 37.275 | 240.577 | 106.639 |
| 14 | 216.66 | 100.196 | 86.841 | 94.55 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.38 | -1.19 | 0.586 | -0.829 |
| 02 | 0.923 | -0.931 | -0.536 | -0.682 |
| 03 | 1.05 | -0.748 | -0.889 | -1.359 |
| 04 | 1.255 | -3.987 | -0.901 | -2.71 |
| 05 | -1.269 | -3.349 | 1.276 | -2.272 |
| 06 | -0.392 | -2.223 | -0.423 | 0.94 |
| 07 | -1.944 | -3.55 | 1.337 | -3.931 |
| 08 | 1.371 | -4.033 | -3.953 | -3.707 |
| 09 | 1.334 | -4.397 | -1.76 | -3.964 |
| 10 | 1.353 | -4.397 | -3.063 | -2.635 |
| 11 | -2.273 | -2.878 | 1.318 | -2.265 |
| 12 | -2.596 | -1.172 | -1.608 | 1.228 |
| 13 | -0.09 | -1.178 | 0.652 | -0.153 |
| 14 | 0.548 | -0.215 | -0.355 | -0.272 |