Model info
Transcription factorPRDM1
ModelPRDM1_HUMAN.H10MO.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginChIP-Seq
Model length14
Quality
C
ConsensusdRMAGWGAAAGTdh
wAUC
0.9471947479063992
Best AUC
0.9471947479063992
Benchmark datasets1
Aligned words507
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilyPRDM1-like factors{2.3.3.12}
HGNC9346
EntrezGene639
UniProt IDPRDM1_HUMAN
UniProt ACO75626
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.8481
0.0005 4.0481
0.0001 6.5341
PCM
ACGT
01182.89536.795225.06453.493
02315.70148.13472.20162.212
03358.98458.12450.29830.842
04440.9280.78849.6926.84
0533.9082.874450.01511.449
0683.69212.09981.044321.412
0716.4932.069478.7620.923
08495.1560.6820.8681.542
09477.2590.020.1450.843
10486.4130.04.347.494
1111.445.541469.7211.546
127.84837.52823.698429.172
13113.75737.275240.577106.639
14216.66100.19686.84194.55
PWM
ACGT
010.38-1.190.586-0.829
020.923-0.931-0.536-0.682
031.05-0.748-0.889-1.359
041.255-3.987-0.901-2.71
05-1.269-3.3491.276-2.272
06-0.392-2.223-0.4230.94
07-1.944-3.551.337-3.931
081.371-4.033-3.953-3.707
091.334-4.397-1.76-3.964
101.353-4.397-3.063-2.635
11-2.273-2.8781.318-2.265
12-2.596-1.172-1.6081.228
13-0.09-1.1780.652-0.153
140.548-0.215-0.355-0.272