Model info
| Transcription factor | Pparg | ||||||||
| Model | PPARG_MOUSE.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 17 | ||||||||
| Quality | A | ||||||||
| Consensus | hWbWRKGdbARAGGKbR | ||||||||
| wAUC | 0.8256461461519156 | ||||||||
| Best AUC | 0.8803082910391935 | ||||||||
| Benchmark datasets | 6 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
| TF subfamily | PPAR (NR1C){2.1.2.5} | ||||||||
| MGI | 97747 | ||||||||
| EntrezGene | 19016 | ||||||||
| UniProt ID | PPARG_MOUSE | ||||||||
| UniProt AC | P37238 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 289.285 | 70.013 | 52.33 | 88.373 |
| 02 | 288.663 | 19.224 | 47.06 | 145.054 |
| 03 | 57.113 | 185.762 | 188.235 | 68.89 |
| 04 | 77.819 | 65.491 | 51.465 | 305.225 |
| 05 | 214.867 | 12.243 | 243.112 | 29.778 |
| 06 | 66.661 | 0.943 | 364.271 | 68.125 |
| 07 | 57.575 | 10.727 | 405.733 | 25.964 |
| 08 | 79.803 | 73.205 | 193.439 | 153.553 |
| 09 | 39.341 | 279.293 | 115.954 | 65.412 |
| 10 | 473.059 | 10.285 | 5.694 | 10.962 |
| 11 | 294.904 | 17.563 | 171.893 | 15.64 |
| 12 | 422.574 | 4.078 | 68.414 | 4.934 |
| 13 | 79.458 | 1.752 | 400.385 | 18.405 |
| 14 | 26.877 | 2.903 | 416.388 | 53.832 |
| 15 | 20.868 | 54.897 | 139.887 | 284.348 |
| 16 | 40.499 | 253.586 | 91.312 | 114.603 |
| 17 | 355.015 | 40.583 | 52.382 | 52.02 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.832 | -0.57 | -0.854 | -0.342 |
| 02 | 0.83 | -1.807 | -0.957 | 0.147 |
| 03 | -0.769 | 0.392 | 0.405 | -0.586 |
| 04 | -0.467 | -0.635 | -0.87 | 0.885 |
| 05 | 0.537 | -2.216 | 0.659 | -1.396 |
| 06 | -0.618 | -3.926 | 1.061 | -0.597 |
| 07 | -0.761 | -2.333 | 1.169 | -1.526 |
| 08 | -0.442 | -0.526 | 0.432 | 0.203 |
| 09 | -1.13 | 0.797 | -0.074 | -0.636 |
| 10 | 1.322 | -2.369 | -2.86 | -2.314 |
| 11 | 0.851 | -1.89 | 0.315 | -1.996 |
| 12 | 1.209 | -3.112 | -0.593 | -2.971 |
| 13 | -0.446 | -3.645 | 1.156 | -1.847 |
| 14 | -1.493 | -3.346 | 1.195 | -0.826 |
| 15 | -1.731 | -0.807 | 0.111 | 0.815 |
| 16 | -1.102 | 0.701 | -0.31 | -0.086 |
| 17 | 1.036 | -1.1 | -0.853 | -0.86 |