Model info
| Transcription factor | Pparg | ||||||||
| Model | PPARG_MOUSE.H10DI.A | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 23 | ||||||||
| Quality | A | ||||||||
| Consensus | nddvnhWbWRKGbbARAGGKbWn | ||||||||
| wAUC | 0.8358730078031252 | ||||||||
| Best AUC | 0.895069341589453 | ||||||||
| Benchmark datasets | 6 | ||||||||
| Aligned words | 503 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
| TF subfamily | PPAR (NR1C){2.1.2.5} | ||||||||
| MGI | 97747 | ||||||||
| EntrezGene | 19016 | ||||||||
| UniProt ID | PPARG_MOUSE | ||||||||
| UniProt AC | P37238 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 58.135 | 11.261 | 55.641 | 24.058 | 65.82 | 14.992 | 8.597 | 31.709 | 46.348 | 20.789 | 26.672 | 26.517 | 19.147 | 11.482 | 47.632 | 31.2 |
| 02 | 47.656 | 23.139 | 99.32 | 19.336 | 23.166 | 6.088 | 5.589 | 23.681 | 40.234 | 25.365 | 49.688 | 23.254 | 21.878 | 14.056 | 52.443 | 25.108 |
| 03 | 33.428 | 30.853 | 53.8 | 14.853 | 28.623 | 23.108 | 2.108 | 14.809 | 51.723 | 62.651 | 79.387 | 13.28 | 8.55 | 24.829 | 42.354 | 15.647 |
| 04 | 48.287 | 19.761 | 34.964 | 19.311 | 38.396 | 61.568 | 1.863 | 39.613 | 67.529 | 28.805 | 48.658 | 32.658 | 15.921 | 7.743 | 11.535 | 23.389 |
| 05 | 106.427 | 25.86 | 29.587 | 8.259 | 77.484 | 23.898 | 0.921 | 15.573 | 57.415 | 19.926 | 13.332 | 6.348 | 35.975 | 32.619 | 15.928 | 30.449 |
| 06 | 184.67 | 15.161 | 18.92 | 58.55 | 60.26 | 3.073 | 5.802 | 33.169 | 33.356 | 0.0 | 8.049 | 18.362 | 25.905 | 4.26 | 4.297 | 26.168 |
| 07 | 31.398 | 119.054 | 124.266 | 29.473 | 2.172 | 9.825 | 0.0 | 10.497 | 0.0 | 20.625 | 10.74 | 5.702 | 19.286 | 49.749 | 56.223 | 10.991 |
| 08 | 8.675 | 4.243 | 9.482 | 30.456 | 20.814 | 26.143 | 5.011 | 147.284 | 25.696 | 15.894 | 27.5 | 122.139 | 5.455 | 8.682 | 14.74 | 27.786 |
| 09 | 34.186 | 1.853 | 21.869 | 2.731 | 41.379 | 5.106 | 6.602 | 1.876 | 40.002 | 1.946 | 11.371 | 3.414 | 113.582 | 3.875 | 206.495 | 3.711 |
| 10 | 26.434 | 0.0 | 188.815 | 13.901 | 7.113 | 0.0 | 0.0 | 5.668 | 28.639 | 0.0 | 173.958 | 43.74 | 0.0 | 0.0 | 9.612 | 2.12 |
| 11 | 10.061 | 1.659 | 49.557 | 0.909 | 0.0 | 0.0 | 0.0 | 0.0 | 69.424 | 5.593 | 290.639 | 6.73 | 4.957 | 0.842 | 55.622 | 4.008 |
| 12 | 16.054 | 6.788 | 53.59 | 8.01 | 1.646 | 1.794 | 0.0 | 4.655 | 45.658 | 64.692 | 142.415 | 143.053 | 4.997 | 2.97 | 1.778 | 1.901 |
| 13 | 5.784 | 35.751 | 19.711 | 7.109 | 10.345 | 51.641 | 4.401 | 9.857 | 15.235 | 101.944 | 65.312 | 15.291 | 9.782 | 76.326 | 54.548 | 16.963 |
| 14 | 34.012 | 0.884 | 5.318 | 0.932 | 245.49 | 7.925 | 7.876 | 4.372 | 131.152 | 3.111 | 5.624 | 4.085 | 43.591 | 0.921 | 2.724 | 1.984 |
| 15 | 295.831 | 20.873 | 121.457 | 16.083 | 11.97 | 0.0 | 0.0 | 0.871 | 13.298 | 0.932 | 4.621 | 2.691 | 8.151 | 0.884 | 2.338 | 0.0 |
| 16 | 276.862 | 2.96 | 44.228 | 5.199 | 19.843 | 0.0 | 2.847 | 0.0 | 103.955 | 2.148 | 20.388 | 1.925 | 15.46 | 0.0 | 4.184 | 0.0 |
| 17 | 39.258 | 1.062 | 367.652 | 8.148 | 1.752 | 0.0 | 1.239 | 2.117 | 9.111 | 0.0 | 59.419 | 3.117 | 0.0 | 0.0 | 5.312 | 1.812 |
| 18 | 3.525 | 0.0 | 46.595 | 0.0 | 0.0 | 0.0 | 1.062 | 0.0 | 30.286 | 4.607 | 332.998 | 65.732 | 0.0 | 0.0 | 11.054 | 4.141 |
| 19 | 0.932 | 0.0 | 21.61 | 11.269 | 0.0 | 0.775 | 2.108 | 1.724 | 24.309 | 46.57 | 104.189 | 216.64 | 0.884 | 0.842 | 16.157 | 51.989 |
| 20 | 9.067 | 8.392 | 3.148 | 5.519 | 13.649 | 25.675 | 1.896 | 6.967 | 23.108 | 72.25 | 24.544 | 24.161 | 15.982 | 170.12 | 40.356 | 55.166 |
| 21 | 50.709 | 4.677 | 2.811 | 3.61 | 208.131 | 21.101 | 10.071 | 37.134 | 52.982 | 3.112 | 10.507 | 3.344 | 47.134 | 9.043 | 24.467 | 11.169 |
| 22 | 94.12 | 100.782 | 108.364 | 55.689 | 11.741 | 4.925 | 1.919 | 19.347 | 13.25 | 12.529 | 8.023 | 14.053 | 6.008 | 8.885 | 20.167 | 20.197 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 0.615 | -0.999 | 0.572 | -0.258 | 0.738 | -0.721 | -1.259 | 0.014 | 0.39 | -0.401 | -0.156 | -0.162 | -0.482 | -0.98 | 0.417 | -0.002 |
| 02 | 0.418 | -0.296 | 1.148 | -0.473 | -0.295 | -1.586 | -1.666 | -0.273 | 0.25 | -0.206 | 0.459 | -0.291 | -0.351 | -0.784 | 0.513 | -0.216 |
| 03 | 0.067 | -0.013 | 0.538 | -0.73 | -0.087 | -0.298 | -2.539 | -0.733 | 0.499 | 0.689 | 0.925 | -0.839 | -1.264 | -0.227 | 0.301 | -0.68 |
| 04 | 0.431 | -0.451 | 0.111 | -0.474 | 0.204 | 0.672 | -2.643 | 0.235 | 0.764 | -0.08 | 0.438 | 0.044 | -0.663 | -1.359 | -0.976 | -0.286 |
| 05 | 1.217 | -0.187 | -0.054 | -1.297 | 0.901 | -0.264 | -3.185 | -0.684 | 0.603 | -0.443 | -0.836 | -1.547 | 0.139 | 0.042 | -0.662 | -0.026 |
| 06 | 1.766 | -0.71 | -0.494 | 0.622 | 0.651 | -2.213 | -1.631 | 0.059 | 0.064 | -4.4 | -1.322 | -0.523 | -0.185 | -1.918 | -1.91 | -0.175 |
| 07 | 0.005 | 1.328 | 1.371 | -0.058 | -2.514 | -1.131 | -4.4 | -1.067 | -4.4 | -0.409 | -1.045 | -1.648 | -0.475 | 0.46 | 0.582 | -1.023 |
| 08 | -1.25 | -1.921 | -1.165 | -0.025 | -0.4 | -0.176 | -1.768 | 1.541 | -0.193 | -0.664 | -0.126 | 1.354 | -1.689 | -1.249 | -0.738 | -0.116 |
| 09 | 0.089 | -2.647 | -0.352 | -2.317 | 0.278 | -1.751 | -1.51 | -2.637 | 0.244 | -2.606 | -0.99 | -2.119 | 1.282 | -2.004 | 1.878 | -2.043 |
| 10 | -0.165 | -4.4 | 1.788 | -0.795 | -1.439 | -4.4 | -4.4 | -1.653 | -0.086 | -4.4 | 1.707 | 0.333 | -4.4 | -4.4 | -1.152 | -2.535 |
| 11 | -1.108 | -2.738 | 0.457 | -3.194 | -4.4 | -4.4 | -4.4 | -4.4 | 0.791 | -1.666 | 2.219 | -1.492 | -1.778 | -3.247 | 0.571 | -1.974 |
| 12 | -0.654 | -1.484 | 0.534 | -1.326 | -2.744 | -2.674 | -4.4 | -1.836 | 0.375 | 0.721 | 1.507 | 1.512 | -1.771 | -2.243 | -2.681 | -2.626 |
| 13 | -1.634 | 0.133 | -0.454 | -1.44 | -1.081 | 0.497 | -1.888 | -1.128 | -0.706 | 1.174 | 0.731 | -0.702 | -1.135 | 0.886 | 0.552 | -0.601 |
| 14 | 0.084 | -3.213 | -1.713 | -3.176 | 2.05 | -1.336 | -1.342 | -1.894 | 1.425 | -2.202 | -1.661 | -1.956 | 0.329 | -3.185 | -2.319 | -2.591 |
| 15 | 2.237 | -0.397 | 1.348 | -0.653 | -0.94 | -4.4 | -4.4 | -3.224 | -0.838 | -3.176 | -1.843 | -2.33 | -1.31 | -3.213 | -2.451 | -4.4 |
| 16 | 2.171 | -2.246 | 0.344 | -1.734 | -0.447 | -4.4 | -2.28 | -4.4 | 1.193 | -2.524 | -0.421 | -2.616 | -0.691 | -4.4 | -1.934 | -4.4 |
| 17 | 0.226 | -3.082 | 2.454 | -1.31 | -2.694 | -4.4 | -2.967 | -2.536 | -1.203 | -4.4 | 0.637 | -2.2 | -4.4 | -4.4 | -1.714 | -2.666 |
| 18 | -2.09 | -4.4 | 0.395 | -4.4 | -4.4 | -4.4 | -3.082 | -4.4 | -0.031 | -1.846 | 2.355 | 0.737 | -4.4 | -4.4 | -1.017 | -1.944 |
| 19 | -3.176 | -4.4 | -0.363 | -0.998 | -4.4 | -3.303 | -2.54 | -2.707 | -0.248 | 0.395 | 1.196 | 1.926 | -3.213 | -3.247 | -0.648 | 0.504 |
| 20 | -1.208 | -1.282 | -2.191 | -1.678 | -0.813 | -0.194 | -2.628 | -1.459 | -0.298 | 0.831 | -0.238 | -0.254 | -0.659 | 1.684 | 0.253 | 0.563 |
| 21 | 0.479 | -1.832 | -2.291 | -2.068 | 1.886 | -0.387 | -1.107 | 0.171 | 0.523 | -2.201 | -1.066 | -2.137 | 0.407 | -1.21 | -0.241 | -1.007 |
| 22 | 1.094 | 1.162 | 1.235 | 0.572 | -0.959 | -1.784 | -2.618 | -0.472 | -0.842 | -0.896 | -1.325 | -0.784 | -1.599 | -1.227 | -0.431 | -0.43 |