Model info
| Transcription factor | PPARG | ||||||||
| Model | PPARG_HUMAN.H10MO.S | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 9 | ||||||||
| Quality | S | ||||||||
| Consensus | hRdAGGKCA | ||||||||
| wAUC | 0.6611097511435666 | ||||||||
| Best AUC | 0.6893912738943406 | ||||||||
| Benchmark datasets | 4 | ||||||||
| Aligned words | 1004 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
| TF subfamily | PPAR (NR1C){2.1.2.5} | ||||||||
| HGNC | 9236 | ||||||||
| EntrezGene | 5468 | ||||||||
| UniProt ID | PPARG_HUMAN | ||||||||
| UniProt AC | P37231 | ||||||||
| Comment | Secondary motif. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 348.0 | 412.036 | 100.328 | 138.003 |
| 02 | 595.94 | 114.789 | 263.901 | 23.736 |
| 03 | 439.91 | 39.792 | 139.277 | 379.388 |
| 04 | 851.037 | 0.546 | 144.597 | 2.186 |
| 05 | 28.997 | 0.0 | 963.881 | 5.489 |
| 06 | 9.713 | 1.639 | 938.0 | 49.014 |
| 07 | 24.226 | 52.521 | 161.725 | 759.894 |
| 08 | 20.775 | 814.29 | 131.627 | 31.675 |
| 09 | 933.104 | 15.367 | 17.883 | 32.012 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.33 | 0.499 | -0.901 | -0.587 |
| 02 | 0.866 | -0.769 | 0.055 | -2.289 |
| 03 | 0.564 | -1.801 | -0.578 | 0.416 |
| 04 | 1.222 | -4.706 | -0.541 | -4.163 |
| 05 | -2.102 | -4.981 | 1.346 | -3.55 |
| 06 | -3.09 | -4.313 | 1.319 | -1.6 |
| 07 | -2.27 | -1.533 | -0.43 | 1.109 |
| 08 | -2.413 | 1.178 | -0.634 | -2.018 |
| 09 | 1.314 | -2.688 | -2.551 | -2.008 |