Model info
| Transcription factor | PPARD | ||||||||
| Model | PPARD_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 14 | ||||||||
| Quality | D | ||||||||
| Consensus | YAGKnnAMAGGWYA | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 18 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
| TF subfamily | PPAR (NR1C){2.1.2.5} | ||||||||
| HGNC | 9235 | ||||||||
| EntrezGene | 5467 | ||||||||
| UniProt ID | PPARD_HUMAN | ||||||||
| UniProt AC | Q03181 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.509 | 6.538 | 1.509 | 8.438 |
| 02 | 13.188 | 0.0 | 3.688 | 1.118 |
| 03 | 0.0 | 1.118 | 16.876 | 0.0 |
| 04 | 1.006 | 1.118 | 13.859 | 2.012 |
| 05 | 6.147 | 4.359 | 4.359 | 3.129 |
| 06 | 3.129 | 6.706 | 4.359 | 3.8 |
| 07 | 13.747 | 3.241 | 0.0 | 1.006 |
| 08 | 10.059 | 3.912 | 3.018 | 1.006 |
| 09 | 15.871 | 0.0 | 1.118 | 1.006 |
| 10 | 0.0 | 0.0 | 17.324 | 0.671 |
| 11 | 1.118 | 0.0 | 15.871 | 1.006 |
| 12 | 2.682 | 0.782 | 1.118 | 13.412 |
| 13 | 1.676 | 13.076 | 1.118 | 2.124 |
| 14 | 13.244 | 0.168 | 3.521 | 1.062 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.85 | 0.33 | -0.85 | 0.562 |
| 02 | 0.98 | -1.978 | -0.169 | -1.043 |
| 03 | -1.978 | -1.043 | 1.215 | -1.978 |
| 04 | -1.106 | -1.043 | 1.027 | -0.647 |
| 05 | 0.274 | -0.027 | -0.027 | -0.304 |
| 06 | -0.304 | 0.353 | -0.027 | -0.144 |
| 07 | 1.019 | -0.276 | -1.978 | -1.106 |
| 08 | 0.725 | -0.119 | -0.334 | -1.106 |
| 09 | 1.156 | -1.978 | -1.043 | -1.106 |
| 10 | -1.978 | -1.978 | 1.24 | -1.321 |
| 11 | -1.043 | -1.978 | 1.156 | -1.106 |
| 12 | -0.427 | -1.244 | -1.043 | 0.996 |
| 13 | -0.778 | 0.972 | -1.043 | -0.607 |
| 14 | 0.984 | -1.769 | -0.207 | -1.074 |