Model info
Transcription factorPpara
ModelPPARA_MOUSE.H10MO.S
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length7
Quality
S
ConsensusdAGGTCA
wAUC
Best AUC
Benchmark datasets
Aligned words119
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyPPAR (NR1C){2.1.2.5}
MGI104740
EntrezGene19013
UniProt IDPPARA_MOUSE
UniProt ACP23204
CommentSecondary motif.
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.0116
0.0005 5.6741
0.0001 7.7199
PCM
ACGT
0155.3610.9630.51817.142
0291.4991.01220.4581.012
030.00.0113.980.0
040.01.686104.8757.419
052.9233.7093.822103.526
061.124111.8440.01.012
07100.070.2536.5487.11
PWM
ACGT
010.645-0.8940.066-0.482
021.139-2.604-0.316-2.604
03-3.222-3.2221.356-3.222
04-3.222-2.3361.274-1.238
05-1.978-1.803-1.781.261
06-2.5541.337-3.222-2.604
071.227-3.028-1.345-1.275