Model info
| Transcription factor | Ppara | ||||||||
| Model | PPARA_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 13 | ||||||||
| Quality | C | ||||||||
| Consensus | RGGbSAvAGGKCR | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 111 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
| TF subfamily | PPAR (NR1C){2.1.2.5} | ||||||||
| MGI | 104740 | ||||||||
| EntrezGene | 19013 | ||||||||
| UniProt ID | PPARA_MOUSE | ||||||||
| UniProt AC | P23204 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 63.261 | 4.823 | 35.893 | 7.403 |
| 02 | 8.076 | 0.0 | 99.603 | 3.701 |
| 03 | 8.973 | 2.804 | 91.864 | 7.739 |
| 04 | 16.376 | 19.965 | 18.844 | 56.195 |
| 05 | 8.973 | 78.292 | 12.114 | 12.002 |
| 06 | 97.36 | 4.711 | 6.169 | 3.141 |
| 07 | 59.111 | 11.104 | 30.397 | 10.768 |
| 08 | 87.601 | 3.701 | 15.142 | 4.935 |
| 09 | 2.804 | 0.0 | 108.576 | 0.0 |
| 10 | 4.935 | 2.019 | 96.35 | 8.076 |
| 11 | 8.188 | 5.047 | 11.329 | 86.816 |
| 12 | 1.122 | 86.704 | 11.777 | 11.777 |
| 13 | 77.955 | 3.814 | 16.04 | 13.572 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.798 | -1.576 | 0.245 | -1.219 |
| 02 | -1.143 | -3.204 | 1.245 | -1.783 |
| 03 | -1.05 | -1.986 | 1.165 | -1.18 |
| 04 | -0.503 | -0.317 | -0.371 | 0.681 |
| 05 | -1.05 | 1.007 | -0.781 | -0.789 |
| 06 | 1.222 | -1.595 | -1.374 | -1.905 |
| 07 | 0.731 | -0.86 | 0.084 | -0.888 |
| 08 | 1.118 | -1.783 | -0.576 | -1.558 |
| 09 | -1.986 | -3.204 | 1.33 | -3.204 |
| 10 | -1.558 | -2.206 | 1.212 | -1.143 |
| 11 | -1.131 | -1.539 | -0.842 | 1.109 |
| 12 | -2.535 | 1.108 | -0.807 | -0.807 |
| 13 | 1.003 | -1.76 | -0.522 | -0.677 |