Model info
| Transcription factor | PKNOX2 | ||||||||
| Model | PKNX2_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Consensus | ddGRhRGSKKdbd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 4723 | ||||||||
| TF family | TALE-type homeo domain factors{3.1.4} | ||||||||
| TF subfamily | PKNOX{3.1.4.5} | ||||||||
| HGNC | 16714 | ||||||||
| EntrezGene | 63876 | ||||||||
| UniProt ID | PKNX2_HUMAN | ||||||||
| UniProt AC | Q96KN3 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1035.618 | 528.813 | 1679.204 | 1364.3 |
| 02 | 512.813 | 273.035 | 1508.165 | 2313.922 |
| 03 | 312.842 | 208.319 | 3803.632 | 283.142 |
| 04 | 2691.939 | 126.271 | 1349.539 | 440.186 |
| 05 | 576.47 | 2682.849 | 555.131 | 793.485 |
| 06 | 2963.761 | 9.085 | 1577.101 | 57.988 |
| 07 | 9.085 | 15.499 | 3999.505 | 583.846 |
| 08 | 309.836 | 698.025 | 3242.669 | 357.404 |
| 09 | 328.281 | 90.607 | 1098.497 | 3090.55 |
| 10 | 410.511 | 145.846 | 3559.867 | 491.71 |
| 11 | 658.245 | 254.702 | 1598.325 | 2096.662 |
| 12 | 593.627 | 1847.961 | 1549.697 | 616.649 |
| 13 | 2164.056 | 547.912 | 1018.566 | 877.401 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.106 | -0.776 | 0.376 | 0.169 |
| 02 | -0.807 | -1.434 | 0.269 | 0.697 |
| 03 | -1.299 | -1.702 | 1.193 | -1.398 |
| 04 | 0.848 | -2.196 | 0.158 | -0.959 |
| 05 | -0.69 | 0.844 | -0.728 | -0.372 |
| 06 | 0.944 | -4.636 | 0.314 | -2.955 |
| 07 | -4.636 | -4.183 | 1.243 | -0.678 |
| 08 | -1.308 | -0.5 | 1.034 | -1.166 |
| 09 | -1.251 | -2.522 | -0.047 | 0.986 |
| 10 | -1.029 | -2.054 | 1.127 | -0.849 |
| 11 | -0.558 | -1.503 | 0.327 | 0.598 |
| 12 | -0.661 | 0.472 | 0.296 | -0.623 |
| 13 | 0.63 | -0.741 | -0.123 | -0.272 |