Transcription factor | PKNOX1 | ||||||||
Model | PKNX1_HUMAN.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 13 | ||||||||
Quality | D | ||||||||
Consensus | RdvKTGATWGAYK | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 10 | ||||||||
TF family | TALE-type homeo domain factors{3.1.4} | ||||||||
TF subfamily | PKNOX{3.1.4.5} | ||||||||
HGNC | 9022 | ||||||||
EntrezGene | 5316 | ||||||||
UniProt ID | PKNX1_HUMAN | ||||||||
UniProt AC | P55347 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 3.735 | 2.082 | 3.184 | 0.0 |
02 | 3.184 | 0.98 | 3.735 | 1.102 |
03 | 2.755 | 3.061 | 2.204 | 0.98 |
04 | 0.0 | 2.082 | 2.204 | 4.714 |
05 | 0.0 | 0.0 | 0.0 | 9.0 |
06 | 0.0 | 0.0 | 9.0 | 0.0 |
07 | 9.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 4.286 | 0.0 | 4.714 |
09 | 2.204 | 0.551 | 1.102 | 5.143 |
10 | 0.0 | 0.0 | 8.02 | 0.98 |
11 | 7.347 | 1.653 | 0.0 | 0.0 |
12 | 1.102 | 1.653 | 0.98 | 5.265 |
13 | 2.082 | 0.0 | 4.408 | 2.51 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.426 | -0.062 | 0.288 | -1.628 |
02 | 0.288 | -0.605 | 0.426 | -0.528 |
03 | 0.166 | 0.254 | -0.017 | -0.605 |
04 | -1.628 | -0.062 | -0.017 | 0.631 |
05 | -1.628 | -1.628 | -1.628 | 1.227 |
06 | -1.628 | -1.628 | 1.227 | -1.628 |
07 | 1.227 | -1.628 | -1.628 | -1.628 |
08 | -1.628 | 0.547 | -1.628 | 0.631 |
09 | -0.017 | -0.934 | -0.528 | 0.71 |
10 | -1.628 | -1.628 | 1.119 | -0.605 |
11 | 1.037 | -0.24 | -1.628 | -1.628 |
12 | -0.528 | -0.24 | -0.605 | 0.731 |
13 | -0.062 | -1.628 | 0.572 | 0.089 |