Model info
| Transcription factor | PITX3 | ||||||||
| Model | PITX3_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 18 | ||||||||
| Quality | D | ||||||||
| Consensus | dddRdWWhvdvGGATTAd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 7586 | ||||||||
| TF family | Paired-related HD factors{3.1.3} | ||||||||
| TF subfamily | PITX{3.1.3.19} | ||||||||
| HGNC | 9006 | ||||||||
| EntrezGene | 5309 | ||||||||
| UniProt ID | PITX3_HUMAN | ||||||||
| UniProt AC | O75364 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1710.0 | 1223.0 | 3141.0 | 1512.0 |
| 02 | 1487.25 | 870.25 | 3935.25 | 1293.25 |
| 03 | 1495.75 | 672.75 | 4138.75 | 1278.75 |
| 04 | 1869.25 | 235.25 | 4087.25 | 1394.25 |
| 05 | 2208.0 | 257.0 | 2977.0 | 2144.0 |
| 06 | 3965.75 | 709.75 | 73.75 | 2836.75 |
| 07 | 1674.0 | 349.0 | 235.0 | 5328.0 |
| 08 | 2018.5 | 1004.5 | 527.5 | 4035.5 |
| 09 | 4546.5 | 1113.5 | 1043.5 | 882.5 |
| 10 | 3646.25 | 712.25 | 1798.25 | 1429.25 |
| 11 | 1647.0 | 906.0 | 4158.0 | 875.0 |
| 12 | 570.0 | 53.0 | 6818.0 | 145.0 |
| 13 | 59.0 | 17.0 | 7302.0 | 208.0 |
| 14 | 6718.0 | 814.0 | 12.0 | 42.0 |
| 15 | 0.25 | 2.25 | 1.25 | 7582.25 |
| 16 | 34.25 | 63.25 | 5.25 | 7483.25 |
| 17 | 7310.25 | 9.25 | 21.25 | 245.25 |
| 18 | 2848.5 | 771.5 | 2710.5 | 1255.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.103 | -0.438 | 0.504 | -0.226 |
| 02 | -0.243 | -0.778 | 0.729 | -0.382 |
| 03 | -0.237 | -1.034 | 0.78 | -0.394 |
| 04 | -0.014 | -2.079 | 0.767 | -0.307 |
| 05 | 0.152 | -1.991 | 0.45 | 0.123 |
| 06 | 0.737 | -0.981 | -3.218 | 0.402 |
| 07 | -0.125 | -1.687 | -2.08 | 1.032 |
| 08 | 0.062 | -0.634 | -1.277 | 0.754 |
| 09 | 0.874 | -0.532 | -0.596 | -0.764 |
| 10 | 0.653 | -0.977 | -0.053 | -0.282 |
| 11 | -0.141 | -0.737 | 0.784 | -0.772 |
| 12 | -1.199 | -3.537 | 1.279 | -2.557 |
| 13 | -3.434 | -4.592 | 1.347 | -2.201 |
| 14 | 1.264 | -0.844 | -4.893 | -3.759 |
| 15 | -6.639 | -6.049 | -6.301 | 1.385 |
| 16 | -3.952 | -3.367 | -5.536 | 1.372 |
| 17 | 1.348 | -5.108 | -4.393 | -2.038 |
| 18 | 0.406 | -0.898 | 0.357 | -0.412 |