Model info
| Transcription factor | PITX2 | ||||||||
| Model | PITX2_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 10 | ||||||||
| Quality | D | ||||||||
| Consensus | YKGGATTWvh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 17 | ||||||||
| TF family | Paired-related HD factors{3.1.3} | ||||||||
| TF subfamily | PITX{3.1.3.19} | ||||||||
| HGNC | 9005 | ||||||||
| EntrezGene | 5308 | ||||||||
| UniProt ID | PITX2_HUMAN | ||||||||
| UniProt AC | Q99697 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.95 | 4.012 | 2.957 | 9.081 |
| 02 | 1.901 | 0.95 | 8.025 | 6.124 |
| 03 | 2.006 | 0.0 | 14.043 | 0.95 |
| 04 | 0.0 | 0.0 | 17.0 | 0.0 |
| 05 | 14.043 | 2.957 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 17.0 |
| 07 | 0.0 | 0.0 | 0.95 | 16.05 |
| 08 | 11.932 | 0.95 | 0.0 | 4.118 |
| 09 | 6.969 | 5.174 | 3.801 | 1.056 |
| 10 | 6.151 | 3.3 | 2.138 | 5.411 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.095 | -0.049 | -0.302 | 0.68 |
| 02 | -0.642 | -1.095 | 0.566 | 0.321 |
| 03 | -0.602 | -1.946 | 1.09 | -1.095 |
| 04 | -1.946 | -1.946 | 1.273 | -1.946 |
| 05 | 1.09 | -0.302 | -1.946 | -1.946 |
| 06 | -1.946 | -1.946 | -1.946 | 1.273 |
| 07 | -1.946 | -1.946 | -1.095 | 1.218 |
| 08 | 0.936 | -1.095 | -1.946 | -0.027 |
| 09 | 0.437 | 0.171 | -0.095 | -1.033 |
| 10 | 0.324 | -0.213 | -0.555 | 0.21 |