Model info
| Transcription factor | PITX1 | ||||||||
| Model | PITX1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | dGGATTARndd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 3182 | ||||||||
| TF family | Paired-related HD factors{3.1.3} | ||||||||
| TF subfamily | PITX{3.1.3.19} | ||||||||
| HGNC | 9004 | ||||||||
| EntrezGene | 5307 | ||||||||
| UniProt ID | PITX1_HUMAN | ||||||||
| UniProt AC | P78337 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 723.474 | 399.281 | 1322.1 | 737.145 |
| 02 | 233.419 | 57.518 | 2830.975 | 60.088 |
| 03 | 51.414 | 18.611 | 3076.88 | 35.095 |
| 04 | 2992.455 | 148.761 | 17.759 | 23.024 |
| 05 | 2.34 | 3.155 | 28.708 | 3147.797 |
| 06 | 4.325 | 10.405 | 8.294 | 3158.976 |
| 07 | 3148.091 | 4.91 | 7.709 | 21.29 |
| 08 | 2170.279 | 116.081 | 578.859 | 316.781 |
| 09 | 743.47 | 785.285 | 1102.446 | 550.799 |
| 10 | 682.107 | 392.953 | 1443.629 | 663.31 |
| 11 | 574.377 | 505.08 | 1533.135 | 569.409 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.095 | -0.687 | 0.507 | -0.076 |
| 02 | -1.22 | -2.595 | 1.268 | -2.553 |
| 03 | -2.703 | -3.655 | 1.351 | -3.068 |
| 04 | 1.323 | -1.666 | -3.697 | -3.461 |
| 05 | -5.21 | -5.038 | -3.256 | 1.374 |
| 06 | -4.834 | -4.162 | -4.348 | 1.377 |
| 07 | 1.374 | -4.746 | -4.407 | -3.533 |
| 08 | 1.002 | -1.91 | -0.317 | -0.917 |
| 09 | -0.067 | -0.013 | 0.326 | -0.366 |
| 10 | -0.153 | -0.703 | 0.595 | -0.181 |
| 11 | -0.325 | -0.453 | 0.655 | -0.333 |