Model info
Transcription factorPdx1
ModelPDX1_MOUSE.H10MO.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length9
Quality
C
ConsensusnSTMATTAR
wAUC
Best AUC
Benchmark datasets
Aligned words74
TF familyHOX-related factors{3.1.1}
TF subfamilyPDX{3.1.1.15}
MGI102851
EntrezGene18609
UniProt IDPDX1_MOUSE
UniProt ACP52946
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.6575
0.0005 5.5228
0.0001 7.4914
PCM
ACGT
0126.67410.66830.75110.668
024.01219.78553.7461.219
031.1774.1180.073.467
0451.77121.1525.8390.0
0578.7620.00.00.0
060.00.00.078.762
070.00.00.078.762
0878.7620.00.00.0
0912.0887.80255.3963.476
PWM
ACGT
010.29-0.5690.427-0.569
02-1.4040.0050.97-2.197
03-2.215-1.383-2.9461.277
040.9340.068-1.098-2.946
051.346-2.946-2.946-2.946
06-2.946-2.946-2.9461.346
07-2.946-2.946-2.9461.346
081.346-2.946-2.946-2.946
09-0.455-0.8491.0-1.515