Model info
| Transcription factor | PDX1 | ||||||||
| Model | PDX1_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Consensus | nSTMATTAR | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 74 | ||||||||
| TF family | HOX-related factors{3.1.1} | ||||||||
| TF subfamily | PDX{3.1.1.15} | ||||||||
| HGNC | 6107 | ||||||||
| EntrezGene | 3651 | ||||||||
| UniProt ID | PDX1_HUMAN | ||||||||
| UniProt AC | P52945 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 26.674 | 10.668 | 30.751 | 10.668 |
| 02 | 4.012 | 19.785 | 53.746 | 1.219 |
| 03 | 1.177 | 4.118 | 0.0 | 73.467 |
| 04 | 51.771 | 21.152 | 5.839 | 0.0 |
| 05 | 78.762 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 78.762 |
| 07 | 0.0 | 0.0 | 0.0 | 78.762 |
| 08 | 78.762 | 0.0 | 0.0 | 0.0 |
| 09 | 12.088 | 7.802 | 55.396 | 3.476 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.29 | -0.569 | 0.427 | -0.569 |
| 02 | -1.404 | 0.005 | 0.97 | -2.197 |
| 03 | -2.215 | -1.383 | -2.946 | 1.277 |
| 04 | 0.934 | 0.068 | -1.098 | -2.946 |
| 05 | 1.346 | -2.946 | -2.946 | -2.946 |
| 06 | -2.946 | -2.946 | -2.946 | 1.346 |
| 07 | -2.946 | -2.946 | -2.946 | 1.346 |
| 08 | 1.346 | -2.946 | -2.946 | -2.946 |
| 09 | -0.455 | -0.849 | 1.0 | -1.515 |