PBX2_HUMAN.H10MO.C motif - HOmo sapiens COmprehensive MOdel COllection

Model info

Transcription factor

PBX2

Model

PBX2_HUMAN.H10MO.C

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Origin

HOCOMOCO v9

Model length

15

Quality

C

Consensus

KvMhKTGATTGWWKb

wAUC

Best AUC

Benchmark datasets

Aligned words

19

TF family

TALE-type homeo domain factors{3.1.4}

TF subfamily

PBX{3.1.4.4}

HGNC

8633

EntrezGene

5089

UniProt ID

PBX2_HUMAN

UniProt AC

P40425

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	4.8791
0.0005	5.5861
0.0001	7.0411

PCM

	A	C	G	T
01	0.752	2.796	6.644	8.809
02	8.297	1.924	7.095	1.684
03	10.222	3.968	3.848	0.962
04	9.861	3.127	1.082	4.93
05	1.082	0.962	6.133	10.823
06	1.082	0.962	0.0	16.956
07	0.962	0.0	15.513	2.525
08	15.032	0.0	3.006	0.962
09	0.0	3.127	0.0	15.873
10	2.044	0.0	0.0	16.956
11	0.0	0.0	14.911	4.089
12	13.468	0.601	2.044	2.886
13	5.171	2.165	0.0	11.665
14	3.127	0.0	8.297	7.576
15	3.247	4.449	7.576	3.728

PWM

	A	C	G	T
01	-1.305	-0.44	0.297	0.554
02	0.499	-0.724	0.356	-0.819
03	0.692	-0.154	-0.18	-1.173
04	0.658	-0.351	-1.104	0.032
05	-1.104	-1.173	0.225	0.745
06	-1.104	-1.173	-2.009	1.171
07	-1.173	-2.009	1.086	-0.52
08	1.056	-2.009	-0.382	-1.173
09	-2.009	-0.351	-2.009	1.108
10	-0.68	-2.009	-2.009	1.171
11	-2.009	-2.009	1.048	-0.128
12	0.951	-1.412	-0.68	-0.415
13	0.074	-0.637	-2.009	0.816
14	-0.351	-2.009	0.499	0.415
15	-0.32	-0.056	0.415	-0.206