Model info
Transcription factorPax6
ModelPAX6_MOUSE.H10MO.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length11
Quality
D
ConsensusTSAdGYGTRAM
wAUC
Best AUC
Benchmark datasets
Aligned words165
TF familyPaired plus homeo domain{3.2.1}
TF subfamilyPAX-4/6{3.2.1.2}
MGI97490
EntrezGene18508
UniProt IDPAX6_MOUSE
UniProt ACP63015
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.7401
0.0005 5.5521
0.0001 7.2173
PCM
ACGT
014.16825.8366.152128.844
028.89388.93362.8064.368
03151.0020.012.6491.35
0474.35410.10416.0864.462
055.26235.935123.0090.794
0610.6124.5867.70322.111
0729.6864.446130.8680.0
084.5653.45322.907134.075
0960.7610.63592.54211.061
10146.1242.7796.9869.112
11119.95122.2979.98712.766
PWM
ACGT
01-2.056-0.45-1.7451.118
02-1.4310.7520.41-2.019
031.276-3.506-1.116-2.785
040.576-1.318-0.8960.436
05-1.872-0.1331.072-3.022
06-1.2761.085-1.555-0.598
07-0.317-2.0061.134-3.506
08-1.985-2.196-0.5641.158
090.378-3.1020.791-1.237
101.243-2.35-1.638-1.409
111.048-0.59-1.329-1.108