Model info
| Transcription factor | Pax5 | ||||||||
| Model | PAX5_MOUSE.H10MO.S | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 8 | ||||||||
| Quality | S | ||||||||
| Consensus | RSCTGAGb | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 3924 | ||||||||
| TF family | Paired domain only{3.2.2} | ||||||||
| TF subfamily | PAX-2-like factors (partial homeobox){3.2.2.2} | ||||||||
| MGI | 97489 | ||||||||
| EntrezGene | 18507 | ||||||||
| UniProt ID | PAX5_MOUSE | ||||||||
| UniProt AC | Q02650 | ||||||||
| Comment | Secondary motif. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 781.898 | 327.144 | 2020.591 | 26.154 |
| 02 | 511.925 | 631.889 | 2011.973 | 0.0 |
| 03 | 21.985 | 2958.448 | 20.845 | 154.509 |
| 04 | 0.0 | 0.0 | 130.777 | 3025.01 |
| 05 | 0.0 | 0.0 | 3155.787 | 0.0 |
| 06 | 3143.234 | 12.553 | 0.0 | 0.0 |
| 07 | 597.147 | 34.672 | 2523.969 | 0.0 |
| 08 | 426.921 | 783.219 | 1369.038 | 576.609 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.009 | -0.877 | 0.939 | -3.335 |
| 02 | -0.431 | -0.221 | 0.935 | -5.973 |
| 03 | -3.495 | 1.32 | -3.544 | -1.62 |
| 04 | -5.973 | -5.973 | -1.784 | 1.342 |
| 05 | -5.973 | -5.973 | 1.384 | -5.973 |
| 06 | 1.38 | -3.994 | -5.973 | -5.973 |
| 07 | -0.278 | -3.071 | 1.161 | -5.973 |
| 08 | -0.612 | -0.007 | 0.55 | -0.313 |