Model info
Transcription factorPax5
ModelPAX5_MOUSE.H10MO.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length19
Quality
D
ConsensusvdRnbYMvYvRRGYRKRRM
wAUC
Best AUC
Benchmark datasets
Aligned words4053
TF familyPaired domain only{3.2.2}
TF subfamilyPAX-2-like factors (partial homeobox){3.2.2.2}
MGI97489
EntrezGene18507
UniProt IDPAX5_MOUSE
UniProt ACQ02650
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.5641
0.0005 5.4321
0.0001 7.1931
PCM
ACGT
011083.925999.6521490.07365.569
021337.648265.3711177.5781158.619
031183.973202.9062476.63475.705
041040.41684.9911356.319857.496
05155.243891.3721998.945893.657
06295.2843024.312120.404499.216
072924.494380.072290.649344.002
08683.2371253.8961674.303327.78
0922.9981616.66410.1641889.394
10601.4021439.2741743.651154.89
112525.12417.6661312.7583.677
122093.48776.648993.238775.844
131.596862.0483075.5730.0
14162.3982959.947244.543572.329
151320.922199.2972219.469199.529
16458.119172.0311171.3672137.7
171296.819182.6882459.1870.522
182256.916235.1231173.886273.292
19712.5532787.984353.54285.138
PWM
ACGT
010.0960.0150.413-0.987
020.306-1.3060.1780.162
030.184-1.5720.921-2.541
040.055-0.3620.32-0.138
05-1.836-0.0990.707-0.097
06-1.21.121-2.087-0.677
071.087-0.949-1.215-1.048
08-0.3650.2410.53-1.096
09-3.6730.495-0.8730.651
10-0.4920.3790.57-1.839
110.94-3.9120.287-2.443
120.753-2.5290.009-0.238
13-5.596-0.1331.137-6.167
14-1.7921.099-1.387-0.541
150.293-1.5890.811-1.588
16-0.763-1.7350.1730.774
170.275-1.6750.914-5.942
180.828-1.4260.175-1.276
19-0.3231.039-1.021-2.426