Model info
| Transcription factor | Pax5 | ||||||||
| Model | PAX5_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 19 | ||||||||
| Quality | D | ||||||||
| Consensus | vdRnbYMvYvRRGYRKRRM | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 4053 | ||||||||
| TF family | Paired domain only{3.2.2} | ||||||||
| TF subfamily | PAX-2-like factors (partial homeobox){3.2.2.2} | ||||||||
| MGI | 97489 | ||||||||
| EntrezGene | 18507 | ||||||||
| UniProt ID | PAX5_MOUSE | ||||||||
| UniProt AC | Q02650 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1083.925 | 999.652 | 1490.07 | 365.569 |
| 02 | 1337.648 | 265.371 | 1177.578 | 1158.619 |
| 03 | 1183.973 | 202.906 | 2476.634 | 75.705 |
| 04 | 1040.41 | 684.991 | 1356.319 | 857.496 |
| 05 | 155.243 | 891.372 | 1998.945 | 893.657 |
| 06 | 295.284 | 3024.312 | 120.404 | 499.216 |
| 07 | 2924.494 | 380.072 | 290.649 | 344.002 |
| 08 | 683.237 | 1253.896 | 1674.303 | 327.78 |
| 09 | 22.998 | 1616.66 | 410.164 | 1889.394 |
| 10 | 601.402 | 1439.274 | 1743.651 | 154.89 |
| 11 | 2525.124 | 17.666 | 1312.75 | 83.677 |
| 12 | 2093.487 | 76.648 | 993.238 | 775.844 |
| 13 | 1.596 | 862.048 | 3075.573 | 0.0 |
| 14 | 162.398 | 2959.947 | 244.543 | 572.329 |
| 15 | 1320.922 | 199.297 | 2219.469 | 199.529 |
| 16 | 458.119 | 172.031 | 1171.367 | 2137.7 |
| 17 | 1296.819 | 182.688 | 2459.187 | 0.522 |
| 18 | 2256.916 | 235.123 | 1173.886 | 273.292 |
| 19 | 712.553 | 2787.984 | 353.542 | 85.138 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.096 | 0.015 | 0.413 | -0.987 |
| 02 | 0.306 | -1.306 | 0.178 | 0.162 |
| 03 | 0.184 | -1.572 | 0.921 | -2.541 |
| 04 | 0.055 | -0.362 | 0.32 | -0.138 |
| 05 | -1.836 | -0.099 | 0.707 | -0.097 |
| 06 | -1.2 | 1.121 | -2.087 | -0.677 |
| 07 | 1.087 | -0.949 | -1.215 | -1.048 |
| 08 | -0.365 | 0.241 | 0.53 | -1.096 |
| 09 | -3.673 | 0.495 | -0.873 | 0.651 |
| 10 | -0.492 | 0.379 | 0.57 | -1.839 |
| 11 | 0.94 | -3.912 | 0.287 | -2.443 |
| 12 | 0.753 | -2.529 | 0.009 | -0.238 |
| 13 | -5.596 | -0.133 | 1.137 | -6.167 |
| 14 | -1.792 | 1.099 | -1.387 | -0.541 |
| 15 | 0.293 | -1.589 | 0.811 | -1.588 |
| 16 | -0.763 | -1.735 | 0.173 | 0.774 |
| 17 | 0.275 | -1.675 | 0.914 | -5.942 |
| 18 | 0.828 | -1.426 | 0.175 | -1.276 |
| 19 | -0.323 | 1.039 | -1.021 | -2.426 |