Model info
| Transcription factor | PAX5 | ||||||||
| Model | PAX5_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 21 | ||||||||
| Quality | A | ||||||||
| Consensus | vbvdRnbCRvYvRdGCRKRRM | ||||||||
| wAUC | 0.8067992292395095 | ||||||||
| Best AUC | 0.8496302143963207 | ||||||||
| Benchmark datasets | 6 | ||||||||
| Aligned words | 498 | ||||||||
| TF family | Paired domain only{3.2.2} | ||||||||
| TF subfamily | PAX-2-like factors (partial homeobox){3.2.2.2} | ||||||||
| HGNC | 8619 | ||||||||
| EntrezGene | 5079 | ||||||||
| UniProt ID | PAX5_HUMAN | ||||||||
| UniProt AC | Q02548 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 85.17 | 161.073 | 176.427 | 75.124 |
| 02 | 88.511 | 204.746 | 105.589 | 98.947 |
| 03 | 132.552 | 134.586 | 178.956 | 51.699 |
| 04 | 130.308 | 45.839 | 169.624 | 152.022 |
| 05 | 152.947 | 31.326 | 299.579 | 13.941 |
| 06 | 105.283 | 104.495 | 197.452 | 90.564 |
| 07 | 12.094 | 106.149 | 251.828 | 127.723 |
| 08 | 11.362 | 394.293 | 6.173 | 85.965 |
| 09 | 370.125 | 35.166 | 74.587 | 17.915 |
| 10 | 106.195 | 108.408 | 253.394 | 29.796 |
| 11 | 7.202 | 303.84 | 36.489 | 150.262 |
| 12 | 105.651 | 219.927 | 152.38 | 19.834 |
| 13 | 271.22 | 10.152 | 212.419 | 4.002 |
| 14 | 278.692 | 29.622 | 108.188 | 81.291 |
| 15 | 7.395 | 142.56 | 347.838 | 0.0 |
| 16 | 6.829 | 391.683 | 7.096 | 92.185 |
| 17 | 131.972 | 23.394 | 323.667 | 18.76 |
| 18 | 55.612 | 18.311 | 136.528 | 287.342 |
| 19 | 142.425 | 10.98 | 341.767 | 2.621 |
| 20 | 346.956 | 20.101 | 99.746 | 30.99 |
| 21 | 89.657 | 363.73 | 20.219 | 24.186 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.374 | 0.255 | 0.345 | -0.497 |
| 02 | -0.336 | 0.493 | -0.162 | -0.226 |
| 03 | 0.062 | 0.077 | 0.359 | -0.861 |
| 04 | 0.045 | -0.978 | 0.306 | 0.198 |
| 05 | 0.204 | -1.343 | 0.871 | -2.096 |
| 06 | -0.165 | -0.172 | 0.457 | -0.313 |
| 07 | -2.223 | -0.157 | 0.699 | 0.026 |
| 08 | -2.278 | 1.145 | -2.792 | -0.364 |
| 09 | 1.082 | -1.233 | -0.504 | -1.868 |
| 10 | -0.156 | -0.136 | 0.705 | -1.391 |
| 11 | -2.667 | 0.885 | -1.198 | 0.186 |
| 12 | -0.162 | 0.564 | 0.2 | -1.774 |
| 13 | 0.772 | -2.376 | 0.53 | -3.122 |
| 14 | 0.799 | -1.397 | -0.138 | -0.419 |
| 15 | -2.645 | 0.134 | 1.02 | -4.396 |
| 16 | -2.71 | 1.138 | -2.679 | -0.296 |
| 17 | 0.058 | -1.62 | 0.948 | -1.825 |
| 18 | -0.79 | -1.847 | 0.092 | 0.83 |
| 19 | 0.133 | -2.308 | 1.002 | -3.408 |
| 20 | 1.017 | -1.761 | -0.218 | -1.354 |
| 21 | -0.323 | 1.064 | -1.756 | -1.588 |