Model info
| Transcription factor | PAX5 | ||||||||
| Model | PAX5_HUMAN.H10DI.A | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 22 | ||||||||
| Quality | A | ||||||||
| Consensus | nnvdRdKYRvYvRRGCRKRRMn | ||||||||
| wAUC | 0.8268282342163985 | ||||||||
| Best AUC | 0.8755705991914444 | ||||||||
| Benchmark datasets | 6 | ||||||||
| Aligned words | 514 | ||||||||
| TF family | Paired domain only{3.2.2} | ||||||||
| TF subfamily | PAX-2-like factors (partial homeobox){3.2.2.2} | ||||||||
| HGNC | 8619 | ||||||||
| EntrezGene | 5079 | ||||||||
| UniProt ID | PAX5_HUMAN | ||||||||
| UniProt AC | Q02548 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 19.045 | 19.25 | 38.36 | 12.416 | 43.495 | 49.818 | 14.498 | 35.341 | 25.104 | 87.883 | 32.177 | 36.605 | 1.941 | 31.732 | 35.382 | 16.953 |
| 02 | 25.669 | 7.742 | 55.254 | 0.921 | 49.602 | 78.017 | 28.977 | 32.087 | 38.365 | 20.366 | 45.741 | 15.945 | 9.625 | 20.714 | 61.076 | 9.899 |
| 03 | 45.791 | 7.928 | 49.559 | 19.984 | 23.733 | 13.953 | 11.214 | 77.94 | 54.935 | 26.659 | 68.993 | 40.461 | 5.912 | 4.31 | 32.342 | 16.286 |
| 04 | 63.578 | 3.885 | 61.072 | 1.835 | 18.9 | 3.861 | 26.877 | 3.213 | 62.955 | 13.611 | 79.54 | 6.002 | 8.907 | 11.644 | 130.234 | 3.886 |
| 05 | 47.795 | 26.182 | 74.689 | 5.674 | 5.999 | 8.048 | 2.682 | 16.273 | 59.923 | 50.787 | 120.14 | 66.873 | 1.26 | 3.099 | 4.995 | 5.582 |
| 06 | 4.694 | 32.312 | 57.629 | 20.343 | 0.968 | 30.782 | 13.787 | 42.579 | 0.0 | 30.661 | 127.134 | 44.71 | 2.033 | 8.921 | 61.944 | 21.503 |
| 07 | 0.947 | 4.94 | 0.989 | 0.819 | 5.871 | 71.282 | 2.252 | 23.271 | 15.953 | 209.66 | 4.666 | 30.216 | 0.994 | 91.941 | 4.804 | 31.395 |
| 08 | 19.002 | 0.0 | 4.763 | 0.0 | 297.108 | 13.047 | 56.452 | 11.215 | 4.721 | 5.215 | 1.786 | 0.989 | 45.315 | 18.331 | 19.358 | 2.696 |
| 09 | 64.852 | 60.182 | 217.049 | 24.064 | 25.967 | 2.892 | 5.878 | 1.856 | 22.056 | 31.628 | 24.737 | 3.939 | 2.764 | 3.995 | 8.14 | 0.0 |
| 10 | 2.213 | 69.972 | 11.776 | 31.679 | 2.702 | 44.59 | 0.918 | 50.487 | 0.0 | 167.377 | 36.107 | 52.32 | 2.965 | 15.494 | 2.934 | 8.466 |
| 11 | 0.935 | 2.051 | 4.894 | 0.0 | 93.776 | 146.182 | 45.41 | 12.066 | 3.944 | 17.038 | 26.84 | 3.912 | 11.244 | 50.371 | 81.337 | 0.0 |
| 12 | 9.966 | 0.938 | 98.996 | 0.0 | 180.432 | 8.735 | 20.614 | 5.861 | 78.816 | 6.355 | 72.482 | 0.827 | 2.719 | 1.149 | 10.911 | 1.199 |
| 13 | 125.861 | 13.56 | 73.279 | 59.232 | 11.521 | 2.278 | 2.38 | 0.998 | 160.915 | 6.914 | 22.446 | 12.728 | 1.867 | 2.72 | 1.04 | 2.26 |
| 14 | 2.929 | 87.472 | 209.763 | 0.0 | 1.773 | 15.722 | 7.977 | 0.0 | 0.0 | 22.752 | 76.393 | 0.0 | 0.0 | 7.313 | 67.905 | 0.0 |
| 15 | 0.0 | 1.72 | 2.118 | 0.863 | 7.299 | 100.271 | 0.0 | 25.689 | 1.926 | 284.671 | 9.698 | 65.744 | 0.0 | 0.0 | 0.0 | 0.0 |
| 16 | 0.983 | 0.873 | 6.055 | 1.313 | 121.249 | 19.318 | 233.015 | 13.08 | 0.942 | 1.235 | 9.639 | 0.0 | 4.03 | 1.715 | 86.551 | 0.0 |
| 17 | 8.505 | 1.987 | 31.994 | 84.718 | 1.934 | 1.978 | 0.0 | 19.229 | 49.933 | 16.05 | 100.275 | 169.003 | 0.0 | 0.0 | 5.828 | 8.565 |
| 18 | 9.01 | 0.0 | 51.362 | 0.0 | 9.083 | 0.863 | 8.095 | 1.975 | 101.999 | 8.966 | 27.132 | 0.0 | 16.628 | 3.367 | 259.763 | 1.757 |
| 19 | 102.445 | 3.737 | 26.596 | 3.941 | 8.539 | 0.0 | 2.781 | 1.875 | 242.932 | 18.197 | 69.886 | 15.337 | 2.856 | 0.0 | 0.0 | 0.876 |
| 20 | 54.751 | 287.312 | 4.842 | 9.868 | 10.405 | 6.324 | 3.475 | 1.73 | 15.733 | 68.93 | 3.328 | 11.272 | 0.0 | 16.986 | 3.092 | 1.952 |
| 21 | 32.73 | 13.883 | 27.328 | 6.948 | 68.167 | 138.856 | 70.685 | 101.845 | 1.931 | 5.222 | 0.942 | 6.642 | 0.835 | 7.995 | 7.788 | 8.204 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | -0.487 | -0.477 | 0.203 | -0.905 | 0.327 | 0.462 | -0.754 | 0.122 | -0.216 | 1.026 | 0.029 | 0.156 | -2.609 | 0.015 | 0.123 | -0.601 |
| 02 | -0.194 | -1.359 | 0.565 | -3.185 | 0.457 | 0.908 | -0.075 | 0.026 | 0.203 | -0.422 | 0.377 | -0.661 | -1.15 | -0.405 | 0.664 | -1.123 |
| 03 | 0.378 | -1.336 | 0.457 | -0.44 | -0.271 | -0.791 | -1.003 | 0.907 | 0.559 | -0.157 | 0.785 | 0.256 | -1.614 | -1.907 | 0.034 | -0.64 |
| 04 | 0.704 | -2.002 | 0.664 | -2.655 | -0.495 | -2.008 | -0.149 | -2.173 | 0.694 | -0.815 | 0.927 | -1.6 | -1.225 | -0.967 | 1.418 | -2.002 |
| 05 | 0.421 | -0.175 | 0.864 | -1.652 | -1.6 | -1.322 | -2.333 | -0.641 | 0.645 | 0.481 | 1.338 | 0.754 | -2.955 | -2.205 | -1.771 | -1.668 |
| 06 | -1.829 | 0.033 | 0.606 | -0.423 | -3.15 | -0.015 | -0.803 | 0.306 | -4.4 | -0.019 | 1.394 | 0.354 | -2.57 | -1.223 | 0.678 | -0.368 |
| 07 | -3.165 | -1.781 | -3.134 | -3.266 | -1.62 | 0.818 | -2.483 | -0.291 | -0.661 | 1.893 | -1.834 | -0.033 | -3.13 | 1.071 | -1.807 | 0.005 |
| 08 | -0.49 | -4.4 | -1.815 | -4.4 | 2.241 | -0.857 | 0.586 | -1.003 | -1.823 | -1.731 | -2.678 | -3.134 | 0.368 | -0.525 | -0.471 | -2.328 |
| 09 | 0.724 | 0.649 | 1.928 | -0.258 | -0.183 | -2.267 | -1.619 | -2.646 | -0.343 | 0.012 | -0.231 | -1.989 | -2.306 | -1.976 | -1.311 | -4.4 |
| 10 | -2.498 | 0.799 | -0.956 | 0.013 | -2.326 | 0.352 | -3.187 | 0.475 | -4.4 | 1.668 | 0.143 | 0.51 | -2.244 | -0.689 | -2.254 | -1.273 |
| 11 | -3.174 | -2.563 | -1.79 | -4.4 | 1.091 | 1.533 | 0.37 | -0.932 | -1.988 | -0.596 | -0.15 | -1.996 | -1.001 | 0.473 | 0.949 | -4.4 |
| 12 | -1.117 | -3.172 | 1.145 | -4.4 | 1.743 | -1.244 | -0.41 | -1.622 | 0.918 | -1.546 | 0.834 | -3.259 | -2.32 | -3.024 | -1.03 | -2.992 |
| 13 | 1.384 | -0.819 | 0.845 | 0.634 | -0.977 | -2.473 | -2.436 | -3.128 | 1.629 | -1.466 | -0.326 | -0.88 | -2.641 | -2.32 | -3.098 | -2.48 |
| 14 | -2.255 | 1.021 | 1.893 | -4.4 | -2.684 | -0.675 | -1.33 | -4.4 | -4.4 | -0.313 | 0.887 | -4.4 | -4.4 | -1.413 | 0.769 | -4.4 |
| 15 | -4.4 | -2.708 | -2.536 | -3.23 | -1.415 | 1.157 | -4.4 | -0.193 | -2.615 | 2.198 | -1.143 | 0.737 | -4.4 | -4.4 | -4.4 | -4.4 |
| 16 | -3.138 | -3.222 | -1.591 | -2.923 | 1.347 | -0.473 | 1.998 | -0.854 | -3.169 | -2.97 | -1.149 | -4.4 | -1.969 | -2.711 | 1.011 | -4.4 |
| 17 | -1.269 | -2.589 | 0.023 | 0.99 | -2.612 | -2.593 | -4.4 | -0.478 | 0.464 | -0.655 | 1.157 | 1.678 | -4.4 | -4.4 | -1.627 | -1.262 |
| 18 | -1.214 | -4.4 | 0.492 | -4.4 | -1.206 | -3.23 | -1.316 | -2.594 | 1.174 | -1.219 | -0.139 | -4.4 | -0.62 | -2.131 | 2.107 | -2.691 |
| 19 | 1.179 | -2.037 | -0.159 | -1.989 | -1.265 | -4.4 | -2.301 | -2.637 | 2.04 | -0.532 | 0.798 | -0.699 | -2.277 | -4.4 | -4.4 | -3.22 |
| 20 | 0.555 | 2.208 | -1.8 | -1.126 | -1.075 | -1.55 | -2.103 | -2.704 | -0.674 | 0.784 | -2.142 | -0.998 | -4.4 | -0.599 | -2.207 | -2.604 |
| 21 | 0.046 | -0.796 | -0.132 | -1.461 | 0.773 | 1.482 | 0.809 | 1.173 | -2.613 | -1.73 | -3.169 | -1.504 | -3.253 | -1.328 | -1.353 | -1.303 |