Model info
| Transcription factor | PAX3 | ||||||||
| Model | PAX3_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Consensus | vhTAATCGATTAh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 5195 | ||||||||
| TF family | Paired plus homeo domain{3.2.1} | ||||||||
| TF subfamily | PAX-3/7{3.2.1.1} | ||||||||
| HGNC | 8617 | ||||||||
| EntrezGene | 5077 | ||||||||
| UniProt ID | PAX3_HUMAN | ||||||||
| UniProt AC | P23760 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 946.25 | 781.25 | 2741.25 | 594.25 |
| 02 | 2154.5 | 839.5 | 555.5 | 1513.5 |
| 03 | 65.0 | 46.0 | 46.0 | 4906.0 |
| 04 | 5061.25 | 0.25 | 1.25 | 0.25 |
| 05 | 5063.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 5063.0 |
| 07 | 0.0 | 2929.0 | 0.0 | 2134.0 |
| 08 | 1.0 | 0.0 | 5062.0 | 0.0 |
| 09 | 5061.0 | 0.0 | 2.0 | 0.0 |
| 10 | 0.0 | 0.0 | 0.0 | 5063.0 |
| 11 | 0.0 | 0.0 | 0.0 | 5063.0 |
| 12 | 4815.5 | 43.5 | 45.5 | 158.5 |
| 13 | 2225.75 | 604.75 | 377.75 | 1854.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.29 | -0.481 | 0.772 | -0.754 |
| 02 | 0.531 | -0.41 | -0.821 | 0.178 |
| 03 | -2.938 | -3.271 | -3.271 | 1.354 |
| 04 | 1.385 | -6.277 | -5.927 | -6.277 |
| 05 | 1.385 | -6.388 | -6.388 | -6.388 |
| 06 | -6.388 | -6.388 | -6.388 | 1.385 |
| 07 | -6.388 | 0.838 | -6.388 | 0.522 |
| 08 | -6.003 | -6.388 | 1.385 | -6.388 |
| 09 | 1.385 | -6.388 | -5.726 | -6.388 |
| 10 | -6.388 | -6.388 | -6.388 | 1.385 |
| 11 | -6.388 | -6.388 | -6.388 | 1.385 |
| 12 | 1.335 | -3.324 | -3.282 | -2.066 |
| 13 | 0.564 | -0.737 | -1.205 | 0.382 |