Model info
Transcription factorPax2
ModelPAX2_MOUSE.H10MO.S
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length7
Quality
S
ConsensusSCRTGAM
wAUC
Best AUC
Benchmark datasets
Aligned words58
TF familyPaired domain only{3.2.2}
TF subfamilyPAX-2-like factors (partial homeobox){3.2.2.2}
MGI97486
EntrezGene18504
UniProt IDPAX2_MOUSE
UniProt ACP32114
CommentSecondary motif.
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.0965
0.0005 5.8949
0.0001 6.9664
PCM
ACGT
017.8420.30629.4470.845
0222.17436.2650.00.0
0329.3843.8825.0560.119
040.04.0920.054.347
050.00.058.4390.0
0652.4420.9532.0462.999
076.87844.4681.0726.021
PWM
ACGT
01-0.5680.3110.668-2.127
020.3950.87-2.732-2.732
030.665-1.160.512-2.621
04-2.732-1.118-2.7321.265
05-2.732-2.7321.336-2.732
061.23-2.071-1.63-1.359
07-0.6831.068-2.012-0.798