Model info
| Transcription factor | Pax2 | ||||||||
| Model | PAX2_MOUSE.H10MO.S | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 7 | ||||||||
| Quality | S | ||||||||
| Consensus | SCRTGAM | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 58 | ||||||||
| TF family | Paired domain only{3.2.2} | ||||||||
| TF subfamily | PAX-2-like factors (partial homeobox){3.2.2.2} | ||||||||
| MGI | 97486 | ||||||||
| EntrezGene | 18504 | ||||||||
| UniProt ID | PAX2_MOUSE | ||||||||
| UniProt AC | P32114 | ||||||||
| Comment | Secondary motif. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 7.84 | 20.306 | 29.447 | 0.845 |
| 02 | 22.174 | 36.265 | 0.0 | 0.0 |
| 03 | 29.384 | 3.88 | 25.056 | 0.119 |
| 04 | 0.0 | 4.092 | 0.0 | 54.347 |
| 05 | 0.0 | 0.0 | 58.439 | 0.0 |
| 06 | 52.442 | 0.953 | 2.046 | 2.999 |
| 07 | 6.878 | 44.468 | 1.072 | 6.021 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.568 | 0.311 | 0.668 | -2.127 |
| 02 | 0.395 | 0.87 | -2.732 | -2.732 |
| 03 | 0.665 | -1.16 | 0.512 | -2.621 |
| 04 | -2.732 | -1.118 | -2.732 | 1.265 |
| 05 | -2.732 | -2.732 | 1.336 | -2.732 |
| 06 | 1.23 | -2.071 | -1.63 | -1.359 |
| 07 | -0.683 | 1.068 | -2.012 | -0.798 |