Model info
| Transcription factor | PAX1 | ||||||||
| Model | PAX1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Consensus | hbGTCACGCWTSAnTKv | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 1173 | ||||||||
| TF family | Paired domain only{3.2.2} | ||||||||
| TF subfamily | PAX-1/9 (no homeo remnant){3.2.2.1} | ||||||||
| HGNC | 8615 | ||||||||
| EntrezGene | 5075 | ||||||||
| UniProt ID | PAX1_HUMAN | ||||||||
| UniProt AC | P15863 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 209.25 | 332.25 | 182.25 | 449.25 |
| 02 | 99.5 | 575.5 | 350.5 | 147.5 |
| 03 | 41.75 | 40.75 | 1039.75 | 50.75 |
| 04 | 78.5 | 56.5 | 34.5 | 1003.5 |
| 05 | 7.0 | 963.0 | 1.0 | 202.0 |
| 06 | 1078.0 | 88.0 | 4.0 | 3.0 |
| 07 | 2.0 | 1010.0 | 4.0 | 157.0 |
| 08 | 5.0 | 3.0 | 1161.0 | 4.0 |
| 09 | 6.0 | 912.0 | 252.0 | 3.0 |
| 10 | 436.0 | 20.0 | 3.0 | 714.0 |
| 11 | 4.25 | 106.25 | 4.25 | 1058.25 |
| 12 | 6.25 | 373.25 | 762.25 | 31.25 |
| 13 | 960.0 | 1.0 | 207.0 | 5.0 |
| 14 | 215.5 | 369.5 | 333.5 | 254.5 |
| 15 | 20.25 | 75.25 | 13.25 | 1064.25 |
| 16 | 108.0 | 33.0 | 819.0 | 213.0 |
| 17 | 442.75 | 374.75 | 272.75 | 82.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.335 | 0.124 | -0.472 | 0.424 |
| 02 | -1.069 | 0.671 | 0.177 | -0.681 |
| 03 | -1.914 | -1.937 | 1.261 | -1.726 |
| 04 | -1.302 | -1.622 | -2.096 | 1.226 |
| 05 | -3.516 | 1.185 | -4.669 | -0.37 |
| 06 | 1.297 | -1.19 | -3.935 | -4.125 |
| 07 | -4.361 | 1.232 | -3.935 | -0.62 |
| 08 | -3.775 | -4.125 | 1.372 | -3.935 |
| 09 | -3.637 | 1.131 | -0.151 | -4.125 |
| 10 | 0.395 | -2.607 | -4.125 | 0.886 |
| 11 | -3.892 | -1.005 | -3.892 | 1.279 |
| 12 | -3.605 | 0.24 | 0.952 | -2.19 |
| 13 | 1.182 | -4.669 | -0.346 | -3.775 |
| 14 | -0.306 | 0.23 | 0.128 | -0.141 |
| 15 | -2.595 | -1.343 | -2.978 | 1.285 |
| 16 | -0.989 | -2.138 | 1.023 | -0.317 |
| 17 | 0.41 | 0.244 | -0.072 | -1.25 |