Model info
| Transcription factor | OVOL1 | ||||||||
| Model | OVOL1_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Consensus | KGTAACKGT | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 7 | ||||||||
| TF family | More than 3 adjacent zinc finger factors{2.3.3} | ||||||||
| TF subfamily | OVOL-factors{2.3.3.17} | ||||||||
| HGNC | 8525 | ||||||||
| EntrezGene | 5017 | ||||||||
| UniProt ID | OVOL1_HUMAN | ||||||||
| UniProt AC | O14753 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.0 | 1.0 | 2.0 | 4.0 |
| 02 | 1.0 | 0.0 | 6.0 | 0.0 |
| 03 | 0.0 | 0.0 | 1.0 | 6.0 |
| 04 | 7.0 | 0.0 | 0.0 | 0.0 |
| 05 | 6.0 | 1.0 | 0.0 | 0.0 |
| 06 | 1.0 | 6.0 | 0.0 | 0.0 |
| 07 | 1.0 | 0.0 | 2.0 | 4.0 |
| 08 | 1.0 | 0.0 | 6.0 | 0.0 |
| 09 | 2.0 | 0.0 | 0.0 | 5.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.525 | -0.408 | 0.106 | 0.696 |
| 02 | -0.408 | -1.525 | 1.065 | -1.525 |
| 03 | -1.525 | -1.525 | -0.408 | 1.065 |
| 04 | 1.208 | -1.525 | -1.525 | -1.525 |
| 05 | 1.065 | -0.408 | -1.525 | -1.525 |
| 06 | -0.408 | 1.065 | -1.525 | -1.525 |
| 07 | -0.408 | -1.525 | 0.106 | 0.696 |
| 08 | -0.408 | -1.525 | 1.065 | -1.525 |
| 09 | 0.106 | -1.525 | -1.525 | 0.897 |