Model info
| Transcription factor | Otx2 | ||||||||
| Model | OTX2_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 15 | ||||||||
| Quality | C | ||||||||
| Consensus | dhdMhvSGATTARvd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 25 | ||||||||
| TF family | Paired-related HD factors{3.1.3} | ||||||||
| TF subfamily | OTX{3.1.3.17} | ||||||||
| MGI | 97451 | ||||||||
| EntrezGene | |||||||||
| UniProt ID | OTX2_MOUSE | ||||||||
| UniProt AC | P80206 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.602 | 2.535 | 10.965 | 7.764 |
| 02 | 7.684 | 5.016 | 2.988 | 9.178 |
| 03 | 5.87 | 2.028 | 7.897 | 9.071 |
| 04 | 13.874 | 7.043 | 3.949 | 0.0 |
| 05 | 10.779 | 3.949 | 2.988 | 7.15 |
| 06 | 6.937 | 5.976 | 9.925 | 2.028 |
| 07 | 1.921 | 3.949 | 17.929 | 1.067 |
| 08 | 2.988 | 0.0 | 21.877 | 0.0 |
| 09 | 23.798 | 1.067 | 0.0 | 0.0 |
| 10 | 0.0 | 0.0 | 0.0 | 24.866 |
| 11 | 0.96 | 0.0 | 0.0 | 23.905 |
| 12 | 24.866 | 0.0 | 0.0 | 0.0 |
| 13 | 12.166 | 2.134 | 8.644 | 1.921 |
| 14 | 11.739 | 3.949 | 5.976 | 3.202 |
| 15 | 4.162 | 3.949 | 8.538 | 8.217 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.466 | -0.743 | 0.517 | 0.199 |
| 02 | 0.19 | -0.188 | -0.616 | 0.352 |
| 03 | -0.051 | -0.908 | 0.215 | 0.341 |
| 04 | 0.738 | 0.111 | -0.39 | -2.168 |
| 05 | 0.501 | -0.39 | -0.616 | 0.125 |
| 06 | 0.098 | -0.035 | 0.424 | -0.908 |
| 07 | -0.947 | -0.39 | 0.982 | -1.322 |
| 08 | -0.616 | -2.168 | 1.173 | -2.168 |
| 09 | 1.254 | -1.322 | -2.168 | -2.168 |
| 10 | -2.168 | -2.168 | -2.168 | 1.297 |
| 11 | -1.381 | -2.168 | -2.168 | 1.258 |
| 12 | 1.297 | -2.168 | -2.168 | -2.168 |
| 13 | 0.614 | -0.871 | 0.297 | -0.947 |
| 14 | 0.58 | -0.39 | -0.035 | -0.561 |
| 15 | -0.346 | -0.39 | 0.286 | 0.251 |