Model info
| Transcription factor | OLIG1 | ||||||||
| Model | OLIG1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 14 | ||||||||
| Quality | D | ||||||||
| Consensus | AMCATATGTTTWbb | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 495 | ||||||||
| TF family | Tal-related factors{1.2.3} | ||||||||
| TF subfamily | Neurogenin / Atonal-like factors{1.2.3.4} | ||||||||
| HGNC | 16983 | ||||||||
| EntrezGene | 116448 | ||||||||
| UniProt ID | OLIG1_HUMAN | ||||||||
| UniProt AC | Q8TAK6 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 411.0 | 23.0 | 37.0 | 24.0 |
| 02 | 194.25 | 273.25 | 27.25 | 0.25 |
| 03 | 0.0 | 495.0 | 0.0 | 0.0 |
| 04 | 495.0 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 495.0 |
| 06 | 495.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 495.0 |
| 08 | 0.0 | 0.0 | 495.0 | 0.0 |
| 09 | 0.0 | 11.0 | 71.0 | 413.0 |
| 10 | 0.0 | 3.0 | 0.0 | 492.0 |
| 11 | 17.75 | 25.75 | 11.75 | 439.75 |
| 12 | 68.0 | 61.0 | 24.0 | 342.0 |
| 13 | 60.0 | 77.0 | 61.0 | 297.0 |
| 14 | 81.75 | 109.75 | 100.75 | 202.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.192 | -1.63 | -1.179 | -1.59 |
| 02 | 0.446 | 0.785 | -1.47 | -4.242 |
| 03 | -4.392 | 1.377 | -4.392 | -4.392 |
| 04 | 1.377 | -4.392 | -4.392 | -4.392 |
| 05 | -4.392 | -4.392 | -4.392 | 1.377 |
| 06 | 1.377 | -4.392 | -4.392 | -4.392 |
| 07 | -4.392 | -4.392 | -4.392 | 1.377 |
| 08 | -4.392 | -4.392 | 1.377 | -4.392 |
| 09 | -4.392 | -2.301 | -0.546 | 1.196 |
| 10 | -4.392 | -3.315 | -4.392 | 1.371 |
| 11 | -1.871 | -1.524 | -2.243 | 1.259 |
| 12 | -0.589 | -0.695 | -1.59 | 1.009 |
| 13 | -0.711 | -0.467 | -0.695 | 0.868 |
| 14 | -0.408 | -0.118 | -0.203 | 0.489 |