Model info
| Transcription factor | Nrf1 | ||||||||
| Model | NRF1_MOUSE.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Consensus | bYGCGCvTGCKY | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 1853 | ||||||||
| TF family | NRF{0.0.6} | ||||||||
| TF subfamily | NRF-1 (alpha-pal){0.0.6.0.1} | ||||||||
| MGI | 1332235 | ||||||||
| EntrezGene | 18181 | ||||||||
| UniProt ID | NRF1_MOUSE | ||||||||
| UniProt AC | Q9WU00 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 181.572 | 989.025 | 391.338 | 278.065 |
| 02 | 42.948 | 300.41 | 151.744 | 1344.898 |
| 03 | 2.114 | 158.475 | 1587.775 | 91.636 |
| 04 | 153.368 | 1535.25 | 117.024 | 34.359 |
| 05 | 72.151 | 41.679 | 1672.103 | 54.067 |
| 06 | 254.526 | 1505.217 | 34.812 | 45.445 |
| 07 | 883.017 | 526.618 | 233.227 | 197.138 |
| 08 | 35.328 | 89.002 | 75.306 | 1640.364 |
| 09 | 32.773 | 181.371 | 1613.359 | 12.497 |
| 10 | 65.688 | 1560.497 | 70.926 | 142.89 |
| 11 | 110.353 | 159.735 | 1341.176 | 228.736 |
| 12 | 59.361 | 1224.896 | 96.095 | 459.648 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.923 | 0.763 | -0.161 | -0.501 |
| 02 | -2.332 | -0.424 | -1.101 | 1.07 |
| 03 | -4.751 | -1.058 | 1.236 | -1.597 |
| 04 | -1.09 | 1.202 | -1.357 | -2.545 |
| 05 | -1.831 | -2.361 | 1.288 | -2.111 |
| 06 | -0.589 | 1.183 | -2.533 | -2.278 |
| 07 | 0.65 | 0.135 | -0.675 | -0.842 |
| 08 | -2.519 | -1.626 | -1.789 | 1.269 |
| 09 | -2.59 | -0.924 | 1.252 | -3.47 |
| 10 | -1.922 | 1.219 | -1.848 | -1.16 |
| 11 | -1.415 | -1.05 | 1.067 | -0.695 |
| 12 | -2.02 | 0.977 | -1.551 | -0.001 |